Hydrogenophaga pseudoflava: HPF_16190
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Entry
HPF_16190 CDS
T06073
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03030
DNA replication
hpse03430
Mismatch repair
hpse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF_16190 (dnaE1)
03430 Mismatch repair
HPF_16190 (dnaE1)
03440 Homologous recombination
HPF_16190 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpse03032
]
HPF_16190 (dnaE1)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_16190 (dnaE1)
Enzymes [BR:
hpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPF_16190 (dnaE1)
DNA replication proteins [BR:
hpse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPF_16190 (dnaE1)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPF_16190 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QBM29233
UniProt:
A0A4V1ABV0
LinkDB
All DBs
Position
complement(3395948..3399514)
Genome browser
AA seq
1188 aa
AA seq
DB search
MFIHLRLHTEFSVVDGTNRIDDAVAAAQADGQPALAITDLNNLFGAVKFYKAARGAGVKP
VLGAEVSLAGFTDETPGAMPGAHQPPAPRVILLVQDKQGYLNLSELLARAWTRSDGRAGA
VVQREWLEELNAGLLMLSGAQAGPVGQALVQGDAQRAADLALQLASLFPHRFYIELQRAG
RADDERHVIAAVQLAARLHLPVVATHPVQFLAEDDYEAHEARVCIAEGEILANNRRVRRF
TREQYFKSSAQMEALFADIPSAIANTLEIAKRCNLTLVLGKPQLPNFPIPPVDGRIMSVE
EYFRHVSYEGLEGRLKHLFPDEAKREEQRPRYVERLEFELNTILKMGFPGYFLIVSDFIK
WAKENGCPVGPGRGSGAGSLVAYALLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS
NRDRVIDYVKDRYGKDAVSQIATFGTMAARAAIRDVGRVLDFSYGFCDGISKLIPNKPGM
SVTLQYPPNPKKEGDKNNYAIEMEPILAERIEKEEDVRTLIELAQKLEGMTRNIGMHAGG
VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK
RHKGQENFRFEDVPLDDKAVYALFSKGQTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA
LYRPGPMDLIPSFVARKHGREVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG
GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISEQKADEVFDLMEKFAGYGFNKSHAAA
YSLLAYHTAWLKVHYTAEFFCGNMTVEMDDTDKLKVLWEDARKMGMAFEPPDVNRGGYRF
EPVTDKLIRYGLGAVKGTGQQAIEAIVAAREGRGEGPNGDEKGPFTSLFNFCLRVDRQRI
NKRTVEALIKAGAFDALNLNRAELLASLDVAFEYAAATQANAHQGGLFDMLGGDDHGSST
QEPAYETTTPWGVKERLTHEKTAIGFYFSGHLFDEVEREVRRFARTPLADVKESRDPVIL
AGIVSDFRVINGQRGKLAFFKLDDKSGVLEVSADEHLINQYRHLLKDDELLVVQATVQPD
RFSGGLRLKIQQIWDLAAARCRFGKYLRVAVNGHAPAIAQLVRDFPPRREDTEQGELVRG
LGVRLMIERAGARCELQLDDRALFFPTDAALASWMAQAHERRAEIVFD
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgttcatccacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccgcatc
gacgacgctgtggccgcggcgcaggccgacggccagcccgcgctggcgatcaccgacctc
aacaacctgttcggtgcggtcaagttctacaaggccgcccgcggggccggcgtcaagccg
gtgctgggggccgaggtgtcgctggccggcttcaccgacgaaacgccgggtgccatgccc
ggtgcccaccagccgccggcgccgcgcgtgatcctgctggtgcaggacaagcagggctac
ctcaacctcagcgagctgctcgcccgcgcctggacgcgcagcgacggccgggccggcgcg
gtggtgcagcgcgaatggctggaggaactcaacgccggcctgctgatgctctccggcgcg
caagccggccccgtggggcaggcgctggtgcagggcgatgcgcagcgcgccgccgacctg
gcgctgcagctggccagcctgttcccgcaccggttctacatcgagctgcagcgcgcgggc
cgtgccgacgacgagcgccatgtgatcgccgcggtgcagctcgccgcgcgcctgcacctg
ccggtggtggcgacgcacccggtgcagtttctggccgaggacgactacgaggcgcacgag
gcgcgggtctgcatcgccgagggcgagatcctggccaacaaccgccgggtgcgccgtttc
acgcgcgagcagtacttcaagtcctcggcgcagatggaagcgctgttcgccgacatcccc
tcggccatcgccaacacgctggagattgccaagcgctgcaacctgaccctggtgctgggc
aagccgcagctgccgaactttccgatcccgccggtggacggccgcatcatgtcggtggag
gagtacttccgccacgtgtcctacgagggactggaagggcgtctgaagcacctcttcccc
gacgaggccaagcgcgaggagcagcgcccgcgctacgtcgagcggctggagttcgagctc
aacaccatcctgaagatggggtttccgggctacttcctgatcgtgtcggacttcatcaag
tgggccaaggaaaacggctgcccggtggggccgggccggggttccggggccggttcgctg
gtggcctacgcgctgctcatcaccgacctcgacccgctgcagtacaacctgctgttcgag
cgcttcctgaacccggagcgggtctccatgcccgacttcgacatcgacttctgccagtcc
aatcgcgaccgggtgatcgactacgtgaaggaccgctacggcaaggacgcggtgagccag
atcgccaccttcggcaccatggccgcgcgcgcggccatccgcgacgtgggccgggtgctc
gacttctcctacggcttctgcgacggcatctcaaagctcatccccaacaagccggggatg
agcgtgacgctgcagtacccgcccaacccaaagaaggagggcgacaaaaacaactacgcc
atcgagatggagcccatcctggcggagcgcatcgagaaggaagaggacgtcaggaccctg
atcgagctggcgcagaagctcgagggcatgacccgcaacatcggcatgcacgccggtggc
gtgctgatcgcgccgggcaagctgaccgacttctgcccgctctaccagcagccgggcagc
gaatcggcggtgagccagtacgacaaggacgatgtggaagccatcggcctggtgaagttc
gacttcctgggcctggccacgctgaccatcctggagatcgcgcgcgagttcatcatgaag
cgccacaagggccaggagaacttccgcttcgaggacgtgccactggacgacaaggccgtg
tacgcgctgttctccaagggccagaccgaggccgtgttccagtttgaaagccgcggcatg
cagggcatgctgcgcgacgccaaacccagccggctggaagacctgatcgccctgaacgcg
ctctaccgcccaggcccgatggacctgatccccagcttcgtggcgcgcaagcacgggcgc
gaggtggtcgagtacccgcaccccctggtggagccggtgctggccgagacctacgggatc
atggtctaccaggagcaggtgatgcagaccgcccaggtgctgggcggctactcgctgggc
ggcgccgacatgctgcgccgggccatgggcaagaagaaacccgaggagatggccgagcac
cgcctgatcttccgcaagggcgcggccgagaagggcatcagcgaacagaaggccgacgag
gtcttcgacctgatggagaagttcgccggctacggtttcaacaagtcgcacgccgccgct
tactcgctgctggcctaccacacggcctggctcaaggtgcactacacggccgagttcttc
tgcggcaacatgaccgtggaaatggacgacaccgacaagctcaaggtgttgtgggaggac
gcgcgcaagatgggcatggccttcgagccgcccgacgtgaaccgcggcggctaccgtttc
gagccggtcaccgacaagctcatccgctacggcctgggggccgtcaagggcacgggccag
caggcgatcgaagccatcgttgcggcgcgcgaagggcgcggcgaaggcccgaacggcgac
gaaaaaggcccgttcaccagcctgttcaatttctgcctgcgggtggaccgccagcgcatc
aacaagcgcacggtggaggcgctgatcaaggcgggggccttcgatgcgctcaacctcaac
cgggccgagctgctggcctcgctggacgtggccttcgagtacgccgcggccacccaggcc
aacgcccaccagggcgggcttttcgacatgctgggcggcgacgaccatggttccagcacg
caggagccggcctacgagaccaccacgccctggggtgtgaaggagcggctgacgcacgag
aagaccgccatcgggttctacttctcgggccacctgttcgacgaggtcgagcgcgaggtg
cggcgcttcgcgcgcacgccgctggccgacgtgaaggaaagccgcgacccggtgatcctg
gccggcatcgtctcggacttccgcgtcatcaacggacagcgcggcaagctggccttcttc
aagctcgacgacaagagcggcgtgctggaggtcagtgccgacgagcacctgatcaaccag
taccgccacctgctcaaggacgacgagctgctggtcgtacaggcgaccgtgcagccggac
cgcttctccggcgggttgcggctgaagatccagcagatctgggacctggcggccgcccgc
tgtcgtttcggcaagtacctgcgcgtggcggtcaacggccacgcaccggccattgcccag
ctggtgcgcgacttcccgccccggcgcgaagacaccgagcagggcgaactggtccgtggg
ctgggggtgcggctgatgatcgagcgcgccggcgcgcgctgcgagctgcagctggacgac
cgggcgctgtttttccccaccgatgcggcgctggccagctggatggcgcaggcccacgag
cggcgcgccgagatcgtgttcgactga
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