Hydrogenophaga pseudoflava: HPF_17950
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Entry
HPF_17950 CDS
T06073
Symbol
orn
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HPF_17950 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_17950 (orn)
03009 Ribosome biogenesis [BR:
hpse03009
]
HPF_17950 (orn)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPF_17950 (orn)
Ribosome biogenesis [BR:
hpse03009
]
Eukaryotic type
Pre-60S particles
RNases
HPF_17950 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QBM29584
UniProt:
A0A4P6X799
LinkDB
All DBs
Position
complement(3762570..3763193)
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AA seq
207 aa
AA seq
DB search
MGENRRMSQDHLNTAAVAADTPVPTLSKSDQNLVWLDCEMSGLDPEKERLLEIAVVVTGP
NLEPRVEGPVFAIHQSDAVLNGMDAWNKGTHGKSGLIDKVKASTVDEEQAQAELLAFIGQ
YVPKNGSPMCGNSIGQDRRFLVKYMPKLEAYFHYRNLDVSTIKELAKRWKPAVYDSFKKH
QRHTALADVHESIDELAHYREHFLRVD
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaatcggcgcatgagccaagaccacctcaacacggccgccgtggccgccgac
acccctgtgcctaccctgagcaagagcgaccagaacctggtctggctcgactgcgagatg
agtgggcttgaccctgaaaaggaacgcctgctggagatcgctgtggtggtcacgggcccc
aacctggagccccgggtggaaggcccggtgtttgccatccaccagagcgacgcggtcctc
aatggcatggacgcctggaacaagggcacccacggcaagagcggcctgatcgacaaggtc
aaggccagcaccgtcgacgaggagcaggcccaggccgagctcctggccttcatcggccag
tacgtgccgaaaaatggttctcccatgtgcggcaacagcatcggacaggaccggcgtttt
ctggtgaagtacatgcccaagctggaggcgtacttccactaccgcaacctggacgtgagc
accatcaaggaactggccaagcgctggaagcctgcggtctacgacagcttcaagaaacac
cagaggcacacggcgctggccgatgtgcacgagtccatcgacgaactggcccactaccgc
gagcacttcctccgggtggactga
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