Hydrogenophaga pseudoflava: HPF_18650
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Entry
HPF_18650 CDS
T06073
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HPF_18650 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_18650 (rnc)
03009 Ribosome biogenesis [BR:
hpse03009
]
HPF_18650 (rnc)
03036 Chromosome and associated proteins [BR:
hpse03036
]
HPF_18650 (rnc)
Enzymes [BR:
hpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
HPF_18650 (rnc)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPF_18650 (rnc)
Ribosome biogenesis [BR:
hpse03009
]
Eukaryotic type
90S particles
RNase
HPF_18650 (rnc)
Prokaryotic type
rRNA processing factors
HPF_18650 (rnc)
Chromosome and associated proteins [BR:
hpse03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
HPF_18650 (rnc)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
QBM29720
UniProt:
A0A4P6X109
LinkDB
All DBs
Position
complement(3906708..3907391)
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AA seq
227 aa
AA seq
DB search
MQKRLGHVFSSPRLIERALTHRSFSADHNERLEFLGDSVLSLAVSGLLFEKLSQLPEGDL
SRVRANLVKQDTLHQIATRLGLSACLRLGDGEKRSGGHKRPSILADALEALIGAVYLDAG
FETASLLVRRLYGDIELSAQMGAMGKDPKTDLQEWLQARKMQLPQYRVVATMGEAHRQTF
DVECTVPEAGRSERGIGASRRAGEQAAAAAMLTFLRAAEPAPTKAGG
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaacgcctgggacatgtgttttccagtccgcgcctgattgaacgcgcgttgact
caccgcagcttttcggcggaccacaacgagcggctggagtttctgggcgattcggtgctg
agtctggctgtgtctggtctgctgttcgaaaaactcagtcagttgccagagggtgatctc
tcacgtgtgcgggccaacctggtcaagcaggacacgttgcatcagatcgcgacacgcctg
ggtctttcggcctgtttgcggctgggtgacggcgaaaagcggtccggaggacacaagcgc
ccctccattctcgcggacgccctggaggccttgatcggggcggtgtatctggacgccggt
ttcgagactgcttcgctgctggtgcggcgcctgtatggtgatatcgaactcagtgcccag
atgggggccatgggcaaggatcccaaaaccgatttgcaggagtggttgcaggcgcgcaag
atgcaactgcctcagtaccgggtggtggccaccatgggtgaggcgcatcgacagaccttc
gacgtcgagtgcacggtcccggaggccggtcgcagcgagcgcggcatcggtgcgtcgcgg
cgggctggagagcaggcggcagcggctgcgatgctgacgtttttgcgggccgccgagccc
gcacccaccaaggcgggcggctga
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