Hydrogenophaga pseudoflava: HPF_18775
Help
Entry
HPF_18775 CDS
T06073
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF_18775 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_18775 (rne)
03009 Ribosome biogenesis [BR:
hpse03009
]
HPF_18775 (rne)
Enzymes [BR:
hpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HPF_18775 (rne)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPF_18775 (rne)
Ribosome biogenesis [BR:
hpse03009
]
Prokaryotic type
rRNA processing factors
HPF_18775 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QBM29745
UniProt:
A0A4P6X4G3
LinkDB
All DBs
Position
3928577..3931480
Genome browser
AA seq
967 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFQGNASPSQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRQELKQALDQLEYPNGMSIIARTAGIGREAAELQ
WDLNYLLKLWNAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNSDIGEILIDTDDIYEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQIEHQIETAYSRVVQLPSGGAIVIDQTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGSISKFGLLEMSRQRLKPTLSEGSSIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRINVLLVPNKSLDTPN
YKLERLKHDDPRLDNLDSSYKLAEEVDDVASFTRRSQERTNKQEPVIKGVLPDGPAPVAA
PKPEVAAPAPVVASPAVVVEPAPARAAAPAEKGFFGWLKSLFGMAPAAVPVTPAPAPAAA
EAPKTDRGEGKSSRDGRGRGGRNGEGRGDRGERQGNRPPRSENRGERTEIQGRGNGEGRR
GDHRAEGRSGEPRGERVEGQGRNGGRRDNRRDNRQDQVADSTALEGQVSTTPAGEAPEAA
AEGARRERRGGRGDNRRRQGQEPGDNASQGVADTALLNAAPADAMTSEPSEAAPAEMAEG
DAAAPRAPRERRSRDRYGRDRRERAPRDGENREEVPAGAEPVALVTADQQDEQRPVRSYF
TQPASPAPSQVEPAPVVVAEPVAVIPDVVAPAAPAPSVAAATAGMPKVVPYTLSMDDLHR
VAQASGLEWVNSDAAKVAEIQAAIAAEPRPIHVPREPRPVVLVDEGPLVLVETRKDLRDV
SLPFENR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaacgccacgcaggccgaagagcgccgcctggcgatcgtggac
gggcagaaactgctcgactacgaaatcgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccctcgctcgaagcctgcttcgtcgactac
ggcgaagaccgccacggcttcttgccgttcaaggaaatctccaagcagtacttccagggc
aatgcctcgccctcccaggcccgcatcaacgacgtgatcaaggaaggccaggaactgctg
gtccaggtcgagaaggaagaacgcggcaacaagggcgcagccctcaccaccttcgtgagc
ctggccggccgctatgtggtgctgatgcccaacaacccgcgcggcggtggcgtcagccgc
cgcatcgagggcgaagaccgccaggaactcaagcaggcactggaccagctggagtatccc
aacggcatgagcatcatcgcccgtaccgccggcatcggccgtgaggcggccgaactgcag
tgggacctgaactacctgctcaagctgtggaacgccatcgacggcgcggccaagggtggc
aagggcgccttcttgatctaccaggaatcgagcctggtgattcgcgccatccgcgactac
ttcaacagcgacatcggcgagatcctgatcgacaccgacgacatctacgagcaggctcac
cagttcatgagccacgtgatgcccgagcacggtcaccgcgtcaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagaccgcctacagccgcgtc
gtgcagctgcccagcggcggcgccatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcgcgcgccatcaagggcggtgacatcgaggaaaccgcgacccgcacc
aacctggaagccgccgacgaggtggcgcgccaggcccgcctgcgcgacctgggtggcctg
atcgtgatcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggctccatcagtaagttc
ggcctgctcgaaatgagccgccagcgcctgaagcccacgctcagcgaaggctcgtccatc
ccctgcccgcgctgcggcggttccggccacatccgcgacaccgaaagctcggcgctgcag
atcctgcgcgtgatccaggaggagtcgctcaaggacagcacggccgccgtgctggtgcag
gtgcctgttgaagtggccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaagcagcgcatcaacgtgctgttggtgcccaacaagtcgctggacacgccgaac
tacaagctcgagcgtctcaagcacgacgatccgcgcctggacaacctcgactccagctac
aagctggccgaggaagtggacgatgtggccagcttcacgcgccgaagtcaggagcgcacc
aacaagcaggagccggtgatcaagggtgtgctgcccgacggcccggcaccagtggctgcg
cccaagcccgaggtggctgcgcccgcaccggtggtcgcgtcccctgcggtggtggtcgag
cccgcgccagcgcgtgccgccgcccccgccgaaaaaggcttctttggctggctcaagagc
ctgttcggcatggcacccgctgcagtaccagtgacgcctgctccggcaccggccgctgct
gaggcgccgaagacagatcgcggcgaaggcaagtcgtccagggacggccgtggtcgtggt
ggccgcaatggcgaaggtcgcggtgaccgcggcgagcgccagggcaaccgcccgccccgc
agcgaaaaccggggagagcgcaccgagatccagggccgcggcaatggtgaaggccgccgt
ggtgaccaccgcgccgagggtcgcagcggcgaaccgcggggcgagcgcgtcgagggacag
ggtcgcaacggaggtcgtcgcgacaaccgccgggacaaccgccaggaccaggtcgccgac
agcaccgcactggaaggacaggtctccaccacgccggcaggtgaagcacctgaggccgcc
gccgaaggcgctcgccgcgaacgccgtggtggccgtggtgacaaccgccggcgccagggg
caggagcccggcgacaacgcatcacaaggcgtggcggacaccgcgctgctcaacgcagcc
cctgctgacgcgatgacctcggagccgtccgaggcagcgcccgcagagatggcggaaggc
gatgccgccgcaccccgcgcgccgcgcgaacgccgcagccgcgaccgctatggccgcgac
cgccgcgagcgcgcgcctcgtgacggtgaaaacagggaagaagtccccgcaggtgcggag
ccggtggccctggtgaccgccgaccagcaggacgagcaacgcccggtgcgcagctacttc
acccagcccgccagcccagcgccgtcacaggtcgagcccgcgcccgtggtggtggccgaa
ccggtcgcggtgattcctgatgtggtggctcccgccgcccccgcgccttcggtcgcggcg
gcaaccgccggcatgcccaaggtcgtgccgtacacgttgtcgatggacgacctgcaccgc
gtggcacaggccagcgggctcgaatgggtcaattcggatgcagcaaaggtcgccgagatc
caggccgccatcgctgcagagcccaggccgatccatgtgccccgcgaacccaggccggtg
gtgctggtcgatgaaggcccgctggtgctggtggagacccgcaaggacctgcgcgatgtg
agcctcccgttcgagaaccgctga
DBGET
integrated database retrieval system
