Hydrogenophaga pseudoflava: HPF_20040
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Entry
HPF_20040 CDS
T06073
Symbol
polC4
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03030
DNA replication
hpse03430
Mismatch repair
hpse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF_20040 (polC4)
03430 Mismatch repair
HPF_20040 (polC4)
03440 Homologous recombination
HPF_20040 (polC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpse03032
]
HPF_20040 (polC4)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_20040 (polC4)
Enzymes [BR:
hpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPF_20040 (polC4)
DNA replication proteins [BR:
hpse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPF_20040 (polC4)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPF_20040 (polC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QBM29994
UniProt:
A0A4P6X8E5
LinkDB
All DBs
Position
complement(4189290..4189958)
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AA seq
222 aa
AA seq
DB search
MIATLLASVRSWWGLQDPVASSDAERWVVVDVETSGLDAKNDRLLAIAAIGLRVGPAPAS
RPEIVLGDSFEVVLRQEAVSDRDNILLHGIGEQRQRDGVEPATALQAFVDFIGEAPLLAF
HSAFDETLIDRHCRRHLGRRLVNPWLDLAHLCAVTHEEVRARSLDDWMAHFGILCPARHQ
ASADTLATAELLLRLWPRIAPEGGRWRDAVRLAGRRRWLAGR
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgattgcaacgctgctggcgtcggtgcggtcatggtgggggctccaggacccggtagct
tcttccgacgccgaacgctgggtggtcgtcgacgttgagaccagtggactggacgcaaag
aatgaccggctcctggccattgcagccatcggtctcagggttggtcctgcgccggcatcg
cggccggagattgtgctgggcgacagcttcgaggtggtgctgcgtcaggaggcggtgtct
gatcgcgacaacatcctcctgcacggcatcggtgagcagcgtcagcgggacggcgtggag
cctgcgacggcgctgcaggcctttgtggacttcattggcgaggcgccgctgctggccttt
cacagcgccttcgacgaaaccctgatcgaccggcattgccggcggcacctgggacgccgg
ctggtcaacccttggctggacctggcccatctctgtgccgtgacccatgaggaggtgcgg
gcccggtcgctggacgactggatggcgcatttcggcatcctgtgcccggcccggcaccaa
gcgtccgccgacacgctggccacggccgagctgttgctacggttgtggcctcgcatcgcg
ccggagggtggccgctggcgcgatgccgtgcgactggctggacgccggcgctggctagcc
gggcgctga
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