Hydrogenophaga pseudoflava: HPF_21515
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Entry
HPF_21515 CDS
T06073
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPF_21515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpse03021
]
HPF_21515 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_21515 (rpoC)
Enzymes [BR:
hpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPF_21515 (rpoC)
Transcription machinery [BR:
hpse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPF_21515 (rpoC)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPF_21515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBM30282
UniProt:
A0A4P6X160
LinkDB
All DBs
Position
complement(4499309..4503523)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLILDMTLRDIERVLYFEAYVIVDPGMTPLKKFAIMSEDDYDAKRKEYGDEFIAKM
GAEGIKELLQAIDLDIEIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERINGKGEGMVFADLAELQRALDNGVV
EITAKISVRLTEWTKNKETGEFVPSTKLVDTTVGRALLSEILPKGLAFEVLNKALKKKEI
SKLINASFRKCGLKETVVFADKLLQNGFRLATRAGISICVDDMLVPKEKAGVIERAEAEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLAKQKTIDASGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVNQEDCGTTNGTLMRAIVEGGEVIESLRDRILG
RTTAEEVIHPETRKVLLGAGVLLDEDMLDDLEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGVIGFN
ATMRYVTNTKGELVVIARSGEIIIHDEHGRERERHKVPYGATLSVKADQQIKAGAILANW
DPLTRPIITEFAGTVKFENVEEGLTVAKQVNDVTGLSSLVVIDPKHRGSAKVVRPLVKLL
DAQGQEVKIPGTDHSVTVGFQIGALLEVRDGQDVGPGHVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKVRLQITDPEGKVWDELIPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGDSSYIAGEQVERSEILNTNDALRAEGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKKDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEERRA
IAEADALSLAADQAEAAGSGEASE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttgctcgacctgttcaagcagttcacgcccgacgaacacttcgatgcgatc
cgcatcggtctggcctcgccggaaaaaatccgctcctggtccttcggtgaagtcaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgcgacggtctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccttcgcgtctgggcctgatcctggacatgacgctgcgtgacatcgaacgcgtgctgtac
ttcgaagcctatgtgatcgtcgacccgggcatgaccccgctgaagaagttcgcgatcatg
tcggaggacgactacgacgccaagcgcaaggaatacggcgacgagttcatcgccaagatg
ggcgccgaaggcatcaaggaactgctgcaggccatcgacctcgacatcgagatcgagaag
ctgcgcaacgacctgaccggctccgagctgaagatcaagaagaacgccaagcgcctgaag
gtgctggaagccttcaagaaatccggcatcaagcccgagtggatggtgctggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgtctgcgccgcctg
ctggaactcaaggctcctgaaatcatcgcccgcaacgaaaagcggatgctgcaggaagcc
gtggactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gccctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgttccgtcatcaccgtgggcccgaccctgaag
ctgcaccagtgcggtctgcccaagctgatggcccttgagctgttcaagcccttcatcttc
tcgcgcctggaagccatgggcatcgccaccaccatcaaggcggcgaagaaggaagtcgaa
tccggcacgccggtggtgtgggacatcctggaagaggtcatcaaggaacacccggttctg
ctgaaccgtgcgcccacgctgcaccgcctgggcatccaggctttcgagcccatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgttcacgtgccgctgtcggtggaagcccagctggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgccaacggcgaaccctccatcgtgccc
tcgcaggacgtggtgctgggtctgtactacgcgacccgcgagcgcatcaacggcaagggc
gaaggcatggtcttcgccgacctggccgagctgcagcgtgcgctggacaacggcgtggtc
gagatcaccgccaagatcagcgtgcgtctgaccgagtggaccaagaacaaggaaaccggc
gagttcgtgccctccaccaagctggtggacacgactgtgggccgtgccctgctgtcggaa
atcctgcccaagggcctggccttcgaggtgctgaacaaggcgctgaagaagaaggaaatc
tccaagctgatcaacgcctccttccgcaagtgcggtctgaaggagaccgtggtcttcgcc
gacaagctgctgcagaacggtttccgcctggccacccgcgccggcatctcgatctgtgtg
gacgacatgctggtgcccaaggagaaggccggcgtgatcgagcgcgccgaagccgaggtg
aaggaaatcgcccagcagtacgcctccggtctggtgaccgccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgagatctccaaggtcatgatggcccagctg
gccaagcagaagaccattgacgcgtcgggcaaggaagtcgaccaggaatcgttcaactcg
atttacatgatggccgactcgggcgcccgcggttccgcggcccagatccgccagctggca
ggcatgcgcggcctgatggccaagccggacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggtctgaacgtgctgcagtacttcatctccacccacggcgcccggaag
ggtctggccgacacggcgctgaagactgcgaactccggttacctgacacgccgtctggtg
gacgtgacgcaagacctggtggtgaaccaggaagactgcggcacgaccaatggcacgctg
atgcgcgccatcgtcgagggcggtgaagtgatcgagtcgctgcgcgaccgcatcctgggc
cgcaccacggccgaggaagtgatccaccccgaaacccgcaaggtgttgctgggcgccggc
gtgctgctggacgaagacatgctcgacgaccttgaggccgctggcgtggacgaagtgaag
gtccgcacggccctgacctgcgagacccgcttcggcatctgcgccaagtgctatggccgc
gacctgggtcgtggcggtctggtgaacatcggcgaagcggtcggcgtgatcgctgcccag
tccatcggtgagcccggcacgcagctgaccatgcgcaccttccacatcggtggtgccgcg
tcccgtgcggccgtggcctccagcgtggaagccaagtcctcgggcgtgatcggcttcaac
gccacgatgcgctacgtgaccaacaccaagggtgaactggtggtgattgcgcgttccggc
gaaatcatcatccacgacgaacacggtcgtgagcgcgagcgccacaaggtgccctacggc
gccacgctgtcggtcaaggccgaccagcagatcaaggccggcgccatcctcgccaactgg
gacccgctgacccgacccatcatcacggaattcgccggtacggtgaagttcgagaacgtg
gaagaaggtctgacggtggccaagcaggtcaacgacgtgaccggtctgtcctcgctggtg
gtgatcgatccgaagcaccgcggctccgccaaggtggtgcgcccgctggtcaagctgctg
gatgcccagggccaggaagtgaagatccccggcaccgaccactcggtgacggtgggcttc
cagatcggcgcgctgctggaagtgcgcgacggtcaggacgtcggcccaggccacgtgctg
gcgcgcatcccggtcgaaggccagaagacgcgcgacatcaccggcggtctgccgcgggtg
gccgagctgttcgaggcccgcagcccgaaggacaagggcatgctggccgagatgaccggt
accgtgtcgttcggcaaggaaaccaagggcaaggtccgcctgcagatcaccgatccggaa
ggcaaggtctgggacgagctcatccccaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagagcgtggtggacggtccggccgatccgcaggacatcctgcgc
ctgctgggcattgaagagctgtcgcgctacatcgtcgacgaggtgcaggacgtctaccgt
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaacccgggcgattcgtcctacatcgccggcgagcaggtcgagcgt
tcggagatcctcaacaccaacgacgccctgcgcgccgaaggcaagatccccgcgacctac
tccaacgtgctgctgggcatcaccaaggcctcgctgtcgaccgactcgttcatctcggcc
gcgtccttccaggaaacgacccgcgtgctcaccgaagccgcgatcatgggcaagaaggac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccccgcgggcaccggc
atggcctatcacgaagcccgcaaggtcaaggaaaagatggacgacgaggagcgccgcgcc
atcgccgaggccgacgcgctgtcgctggccgcggaccaggccgaagccgccggttccggc
gaagcgtcggaataa
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integrated database retrieval system
