Hydrogenophaga pseudoflava: HPF_21520
Help
Entry
HPF_21520 CDS
T06073
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPF_21520 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpse03021
]
HPF_21520 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_21520 (rpoB)
Enzymes [BR:
hpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPF_21520 (rpoB)
Transcription machinery [BR:
hpse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPF_21520 (rpoB)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPF_21520 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
DUF5887
Motif
Other DBs
NCBI-ProteinID:
QBM30283
UniProt:
A0A4V1AC55
LinkDB
All DBs
Position
complement(4503550..4507674)
Genome browser
AA seq
1374 aa
AA seq
DB search
MASASKYSYTERKRIRKSFGSRENVLAIPYLLQMQKDAYTAFLQADTAPKKRTAEGLQAA
FEAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTA
QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGLTPETILANFFVNDH
FRLMDSGAQMAFVSERLRGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTTHISVP
EDFLIGRVMAKNIVDPDTGEIIAKANDELTEALLKKLRSAGVQELPCIYTNELDQGAYIS
QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNAR
VGRDEATGPMVLSNDDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGL
ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKR
RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE
TPYRRVVDGKVTNQIDYLSAIEEGKYVIAQANATLDAEGRLTGDLISAREKGESILTPAD
TIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPTLRPEKPLVGTGIERVA
AIDSGTVVTARRGGVVDYVDATRIVIRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVKRGDKLAKGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVADDRY
TSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDDSGIIYVGAEVQPGDVLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQI
IDDELKRFRLDLNDQLRIVEADAFDRIEKLLLGKVANGGPKKLAKGTKIDKAYLDEVEKY
HWFDIRPAEDDVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRLLQPGDKMAGRHGNKGVVSKITPVEDMPHLADGTPVDIVLNPLGVPSRMNIGQVLEV
HLGWAGKGLGQRIGDMLQREAAMTEVRGFLEQIYNATGRKEDLSELSDDELRVMAQELTN
GVPFASPVFDGASEQEIMDMLKLAYPDDVAKAKGLTETRTQAQLYDGRTGEAFERKTTVG
YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQ
EMLTVKSDDVQGRTKVYESIVKGEHSIDAGMPESFNVLVKEIRSLGIDIELDRS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcatcgaaatattcctacaccgaacgcaagcgcatccgcaagagctttggc
agccgcgagaatgtgctcgcgattccctacctgctgcagatgcagaaggacgcctacacc
gcgttcctgcaggccgacaccgcgcccaagaagcgcaccgctgaaggcctgcaggccgcc
ttcgaagccgccttccccatcgtctcgcacaacggttttgtcgagatgaagttcgtcgaa
tacaacctggccaagccagcgttcgacgtgcgcgagtgccagacccgcggtctgaccttc
gcttccgccgtgcgcgcgcgcgtgcagctgatcatctacgaccgcgagtcctcgaccgcc
cagtccaaggtggtcaaggaagtgaaagagcaagaggtctacatgggcgaagtgcccctg
atgaccgacaagggctccttcatcatcaacggcaccgagcgtgtcatcgtgtcgcagttg
caccgctcgccgggtgtgttctttgagcacgacaagggcaagacgcacagctcgggcaag
ctgctgttctcggcccgcatcattccctaccgcggctcctggctggacttcgagttcgac
cccaaggacatcctgttcttccgtgtcgaccgccgccgcaagatgccggtcaccatcctg
ctcaaggccatcggcctgacgccggaaaccatcctggcgaacttcttcgtcaacgaccac
ttccgcctgatggacagcggcgcccagatggccttcgtttccgagcgcctgcgcggcgag
gtggcccgtttcgacatcaccgacaagtcgggcaaggtggtggttgccaaggacaagcgc
atcaccgcgcgccacacccgtgagctggagcagtcgggcaccacgcacatcagcgtgccg
gaagatttcctgatcggccgcgtgatggccaagaacatcgtcgatccggacaccggcgag
atcatcgccaaggccaacgacgagctgaccgaagccctgctgaagaagctgcgctcggcc
ggcgtgcaggaactgccctgcatctacaccaacgaactggaccagggcgcctacatcagc
cagaccctgcgcaccgacgaaaccgtcgacgagttcgctgcccgcgtggccatctaccgc
atgatgcgccccggcgagccgccgaccgaagacgccgtgcaggccctgttccaccgcctg
ttctacaacccggacacctacgacctctcgcgcgtgggccgcatgaagttcaacgcccgc
gtgggccgcgacgaagccaccgggccgatggtgctgtccaacgacgacatccttgccgtg
gtcaagatcctggtggacctgcgcaatggccgcggtgaagtcgacgacatcgaccacctg
ggcaaccgccgcgtgcgctgcgtcggcgaactggccgagaaccagtaccgcaccggtctg
gcgcgtatcgagaaggccgtgaaggagcgtctgggtcaggccgagcaagagccgctgatg
ccgcacgacctgatcaactccaagccgatttccgcggccctgaaggagttcttcggcgcg
tcccagctgtcgcagttcatggaccagaccaacccgctggccgagatcacccacaagcgc
cgcgtgtcggccctgggcccgggcggtctgacccgcgaacgcgccggcttcgaggtgcgc
gacgtgcacgtgacccactacggccgcgtctgcccgatcgaaacgccggaaggtccgaac
atcggcctgatcaactcgctggccctgtacgcccgcctgaacgagtacggcttcatcgag
accccgtaccgccgcgtggtggacggcaaggtgacgaaccagatcgactacctgtcggcc
atcgaggaaggcaagtacgtcatcgcccaagcgaacgcgacgctggacgccgaaggtcgc
ctgaccggtgacctgatctctgcccgtgagaagggtgaatccatcctgaccccggccgac
accatccagtacatggacgtgtcgccggcgcagatcgtgtcggtggccgcttcgctggtg
cccttcctggagcacgacgacgccaaccgcgcactgatgggcgccaacatgtcgcgtcag
gccgtgcccacactgcgtccggaaaagccgctggtcggcaccggcatcgagcgcgtggcc
gcgatcgactccggcaccgtggtgaccgcccgccgcggcggcgtggtggactacgtggac
gccacccgcatcgtgatccgggtcaacgacgccgaggccgtggctggcgaagtgggtgtg
gacatctacaacctgatcaagtaccagcgttccaaccagaacaccaacatccaccagcgc
cccatcgtcaagcgcggcgacaagctggccaagggcgatgtgatcgccgacggtgcgtcg
acggacctgggcgagatctcgatcggccagaacatgctgatcgccttcatgccctggaac
ggctacaactttgaggactcgatcctgatcagcgagcgcgtggtggccgacgaccgctac
accagcatccacatcgaggaactggtggtgatggcgcgcgacaccaagctgggcgccgaa
gaaatcacccgcgacatcccgaacctggccgagcagcagctcaaccgcctggacgactcc
ggcatcatctacgtgggcgccgaagtgcagcctggcgacgtgctggtgggcaaggtcacg
cccaagggcgagaccacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcctccgacgtgaaggacacctcgctgcgtgtggaccagggctcgcagggcaccgtg
atcgacgtgcaggtcttcacccgcgaaggcatccagcgcgacaagcgcgcccagcagatc
atcgacgacgagctcaagcgcttccgtctggatctgaacgaccagctgcgcatcgtcgag
gccgacgccttcgaccgtatcgaaaagctgctgctgggcaaggtggccaatggcggtccg
aagaagctggccaagggcacgaagatcgacaaggcctacttggacgaggtcgagaagtac
cactggttcgacatccgcccggcggaagacgacgtggccgcccagcttgagtcgatcaag
aactccatggagcagacccgccacagcttcgacctggctttcgaagagaagcgcaagaag
ctcacccagggtgacgagctgcccgcaggcgtgctcaagatggtcaaggtctatctggcc
gtcaagcgcctcctgcagcctggcgacaagatggccggccgccacggcaacaagggtgtg
gtttccaagatcaccccggtggaagacatgccccatctggccgacggtaccccggtcgac
atcgtgctgaacccgctgggcgtgccttcgcgcatgaacatcggtcaggtgctcgaagtc
cacctgggatgggccggcaagggcctgggccagcgcatcggcgacatgctgcagcgcgaa
gccgcgatgaccgaagtgcgcgggttcctggagcagatctacaacgccaccggccggaag
gaagacctgtctgagctgtccgacgacgagctgcgcgtgatggcgcaggagctgaccaac
ggggtcccgttcgcttcgcccgtgttcgacggcgcgtccgaacaggagatcatggacatg
ctcaagctggcctatccggacgacgtcgccaaggccaagggcctgaccgagacccgcacc
caggcgcagctctacgacggtcgcaccggcgaagccttcgagcgcaagaccaccgtgggc
tacatgcactacctcaagctgcaccacctggtcgacgacaagatgcacgcccgttccacc
ggcccgtactccctggtcacccagcagccgctgggcggcaaggcccagttcggtggccag
cgtttcggtgagatggaagtgtgggcgctggaggcctacggtgcttcgtacatcctgcag
gaaatgctcaccgtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagtccatc
gtcaaaggcgagcactcgatcgatgcgggcatgcccgagtcgttcaacgtgctggtcaag
gaaatccgctcgctcggtatcgacatcgagctggaccgctcctga
DBGET
integrated database retrieval system
