Helicobacter pylori Sat464: HPSAT_00405
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Entry
HPSAT_00405 CDS
T01897
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpt
Helicobacter pylori Sat464
Pathway
hpt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPSAT_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpt03021
]
HPSAT_00405
Transcription machinery [BR:
hpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPSAT_00405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
DUF1687
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
ADO04838
LinkDB
All DBs
Position
complement(77802..79802)
Genome browser
AA seq
666 aa
AA seq
DB search
MKKKVNEEKAPKKTKTEATQENKIKESKIKEAKTKEGKVKETKAKEPVPVKKLSFNEALE
ELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIK
KTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQI
RLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKDDDSE
EDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVRLLTLAY
KRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKK
ILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKRG
KLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFS
TYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVG
LSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVL
DQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRIL
RNYLRI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagttaacgaagaaaaagccccaaaaaaaaccaaaacagaagccacacaa
gaaaataaaatcaaagagagcaaaattaaagaagctaaaaccaaagaaggcaaagtcaaa
gaaactaaagcgaaagaacctgttcctgttaaaaagcttagtttcaatgaagcgttagaa
gaattgttcgctaattccttaagcgattgcgtttcttatgagtctatcattcaaatcagt
gcgaaagtccccactctagcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaa
aagaaattagtcagctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaa
aaaactgaagaaaagcaaaaagttttagatgaagaattagaagatggctatgactttttg
aaagaaaaggattttttagagtggagcagaagcgatagcccggtgcgcatgtatttgcgc
gaaatgggggatataaaacttttaagcaaagatgaagagattgaattgagcaagcaaatc
cgcttgggcgaagacattattttagacgcgatttgctcggtgccgtatttgattgatttt
atttatgcgtataaagacgctttaatcaatcgtgaaagaagggttaaggagcttttcagg
agctttgatgatgacgatgaaaatagcgtgagcgattctaaaaaagatgacgacagcgaa
gaagatgaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaagacaggaagcgtgta
gaaaaggttcaagaaagctttaaagccctagataaggctaaaaaagaatggctcaaagcc
cttgaagcccctgtagatgaaaaagaagatgaattggtgcgtttattgaccctagcttac
aaacgccaaacgctcaaagacagactctatgacttagagcctactagcaaactgattaat
gaattagtcaaaacgatggaaaccactttaaaaagcggcgatgggtttgaaaaagagttg
aaacgcttggaatacaaactgcccttattcaatgacaccttgatcgcaaaccataaaaaa
atccttgctaatatcactaacatgactaaagaagatattatcgctcaagtcccagaagcg
actatggtgagcgtgtatatggatctcaaaaagctttttttgactaaagaagcgagcgaa
gagggctttgatttagaccctaacaagctaaaagaaattttagagcaaatcaaaagaggg
aaattgatttccgatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtg
agcatcgctaaacgattcacgagcagaggcttaccattcttggatttgattcaagagggt
aatatcggcttgatgaaagcagtggataagtttgagcatgaaaagggcttcaagttttct
acctatgcgacctggtggatcaagcaagctatcagcagagccatagccgatcaagcccgc
actatccgcatccccattcacatgattgacacgattaatcgcatcaataaagtcatgcgc
aagcacattcaagaaaacggcaaagagcctgatttggaagtggtggctgaagaagtgggg
ctttcgttagataaagtgaagaatgtgattaaggttactaaagagcctatcagtttggaa
accccagtcggcaatgatgatgacggcaaatttggggatttcgtggaagataaaaatatc
gttagctccattgatcacatcatgcgagaagatttaaaagcgcaaattgaaagcgttttg
gatcagttgaatgagcgagaaaaagcggtgatccgcatgcgttttgggcttttagacgat
gagagcgatcgcactttagaagaaatcggcaaggaattgaatgttactagagaaagggtg
cgccagattgaaagctctgcgattaaaaaattgagaagcccgcaatacgggcgcatttta
agaaactatttgcgcatttga
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