KEGG   Helicobacter pylori Sat464: HPSAT_05335
Entry
HPSAT_05335       CDS       T01897                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hpt  Helicobacter pylori Sat464
Pathway
hpt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPSAT_05335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpt03400]
    HPSAT_05335
DNA repair and recombination proteins [BR:hpt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPSAT_05335
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HPSAT_05335
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII UVR DEAD AAA_30 Microtub_bd Kinesin AAA_7 DUF87 HAM1_N
Other DBs
NCBI-ProteinID: ADO05785
LinkDB
Position
complement(1081764..1083740)
AA seq 658 aa
MPLFDLKSPYPPAGDQPQAIEALTKSLKDNNHYQTLVGVTGSGKTYTMANIIANTNKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK
LRDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKLRTL
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccccaagccata
gaagccttaacgaagagcttgaaagataacaaccattatcaaactttagtgggggttaca
gggagcggtaaaacttatacgatggccaatatcatcgccaataccaacaaacccactctg
atcatgagccataataagaccttatgcgcgcagctctatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgactactaccagcctgaaagctat
atccctagaagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgaggttgagtgcagccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttataagagctttttattaaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagttttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttatcaggattgaattttttggcgatgagata
gaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaagataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcaaccggt
gtgtgtaagggcattgaaaattacgcgcgccattttacaggcaaagcccctaatgaaacg
cctttttgtttgtttgattatttagggatatttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccgcagtttggagggatgtatgcaggagatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgccacgcccaataag
ctagaattagagctttctcaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttatttgatgaa
atcaagttagtggtggctagagatgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaagcgcgttacatgcatagt
gaaattgatgcgattgaaagaaatcacatcatccgttctttaaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaagggttggatttgcctgaagtttctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagtctcattcaaacc
atggggcgagctgctagaaacgctaatggcaaggttttattatacgccaaaaaaatcact
caaagcatgcaaaaagcctttgaaattacgagctacaggcgcgctaagcaagaagaattt
aataagcttcatcatatcacccccaaaaccgttactcgcgccttagaagaggagttgaaa
ttaagagacgatgaggttaaaattgctaaagccttaaaaaaggacaaaatccctaaaagc
gaaagggaaaagatcattaaagaactggataaaaaaatgcgagaatgcgcgaaaaatttg
gattttgaagaagcgatgcatttgagagacgaaatcgctaaattaagaacgctttaa

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