Helicobacter pylori Sat464: HPSAT_06020
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Entry
HPSAT_06020 CDS
T01897
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpt
Helicobacter pylori Sat464
Pathway
hpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSAT_06020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpt03019
]
HPSAT_06020
03016 Transfer RNA biogenesis [BR:
hpt03016
]
HPSAT_06020
Enzymes [BR:
hpt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPSAT_06020
Messenger RNA biogenesis [BR:
hpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPSAT_06020
Transfer RNA biogenesis [BR:
hpt03016
]
Prokaryotic type
tRNA degradation factors
HPSAT_06020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
ADO05915
LinkDB
All DBs
Position
complement(1223907..1225841)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALGCNKERYFLKEGFDIGRIERAENKAFFI
SLAKNYPKDPLIKNLPPFFKTDALILCKIECSKKRPIAFFKAALLNADHTMIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQHYAQLKASDFKNRINYSHLPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLENARLFQGVIEVRANCTYEEINHFLSAQQSSLDNDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKTALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVRTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttggatgcaacaaggaacgctatttc
ttaaaagaaggctttgatataggcagaattgagcgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttaatcaaaaacttacccccattttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttattagaattgcccaggcattgcgtggtaaaaatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttggatttagcccaacattac
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacctcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttggaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacctatgaagaaatcaaccattttttaagcgcccaacaaagc
tctttagataacgacttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaagattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaagaagccatgctattagccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttccctttt
ttagagcatgctttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcctattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattgtgcgctgagttgaacgctttacaaaaaaagaccgctttgattgaa
agggattttgtcaagcgcaaattcgctcgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcagaacgaacaaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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