Helicobacter pylori Cuz20: HPCU_06100
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Entry
HPCU_06100 CDS
T01894
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpu
Helicobacter pylori Cuz20
Pathway
hpu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPCU_06100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpu03021
]
HPCU_06100
03400 DNA repair and recombination proteins [BR:
hpu03400
]
HPCU_06100
Enzymes [BR:
hpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPCU_06100
Transcription machinery [BR:
hpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPCU_06100
DNA repair and recombination proteins [BR:
hpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPCU_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADO04366
UniProt:
A0AB32X9K1
LinkDB
All DBs
Position
complement(1245158..1253830)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQIPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLHVSSLLSQAILEEPFSHNGKDYKEGDRIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINKKDPLTIHVLESCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
SPKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKDPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VCNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDRGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKIEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMGKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVRDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDIIAGVTVAEKEDENTGTT
SLVVNDYIPSGYKPSLFLEGINGEEVRYFLEPKTSIAISDGVSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDDPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattgcaacgagatagttatgattcttttttgtat
tctaaagagggtaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagagaggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatc
attaatggggtggagcgcgtggtcgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgttactattttattcagggcgatggactatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcgggaaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtggggaaagaagtcttattggacatgctcactcagctagataagaat
aggttagagaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctggcg
ttagggcatgacgcttccattatccaatctttttcagccgattctgagtctttgaaattg
ctcaagcaaactgaaaaaattgatgatgaaaacgctctagcggcgattcgtattcataag
gttatgaagccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatcctgaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgaccttaacgcatgaagatattatcaccacc
gttaaatatctcatgaagatcaaaaacaatcagggcaagattgatgacagggatcacttg
ggcaatcgtaggatcagggcggtaggggaattattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgattacaagcacgatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaactaaccccttgagtgaggttacacac
aaacgccgcctttcagcactcggtgaagggggattggtgaaagacagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgattaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagatagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttgaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtagctgcatcg
ctcattcctttcttagaacatgatgacgctaaccgcgccttaatggggactaacatgcag
cgccaagcggtgccgttattgagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgtgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaaatccctatc
gttaaggtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttggcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aattttgaagacgctatcgtggtgagtgagtgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgccagggagcttaagcatggcgtggaagaattt
accgctgacattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccccccaagtttggaaggcacggtgattgat
gtgaaagttttcactaaaaaaggctatgagaaagacgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcacgtcagttcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggattataaagaaggcgatcgaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggccagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaacatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaataaaaaagaccccttgacaatccatgttcttgagagttgttctgatgaagaa
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgacgggcgcacaggcgaaaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttggtaacgcaccagcccgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggtgcagcgcacactctaaaa
gaaatgctcaccattaaatctgatgatattagaggtagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
tcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcacgctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccttaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggtcctactaaagattatgaatgcttgtgcggtaaatacaaaaaacctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttc
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagatccaggcgaagccgcttatgacaatgaaggcactaaa
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggtgttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgccgt
gtcatcaatcgtaaccaacgcttgaaacgcttaatggagcttggggcgccagaaatcatt
gtgtgcaatgaaaaaaggatgctgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggcaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggccaaacctcaagatggacgagtgcggattgcctaaaaac
atggcgttggaactcttcaaaccgcatttattgtccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctaattgatggcaaagcgatccaattgcacccg
ttggtgtgttcagcgttcaacgccgattttgacggggaccaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcccgctagtggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataaacttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcgagggaatattatcgctacgagcgcggggcgcatgatcattaagtccattttgcct
gactttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggtggtatcggtattaccgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaaatagaggttaaaaaaatc
cagcaacaatacgatcaagggctgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgggtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaagggggagtgcggca
caaatccgtcagctttcagcgatgagaggtcttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacagcactaaaaacagccaatgcggggtat
ttgaccagaaagctcattgatgtttcgcaaaatgtcaaggtggtctctgatgattgtggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcagacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtggctgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtcggcgggacagcgagcaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaatttgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagttagggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggcgcaatcaaatactatgttttagaggctaatcatttagaacgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgggtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggcaccaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
attaatggcgaagaggtgcgttatttcttagagccaaaaacttctatcgctattagcgat
ggcgttagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agagatattactgggggtctcccaagggtttcggaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggatcgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacctctaaagatggccgttccatggattattttgtg
gataagggcaagcaaattttagtgcatgctgatgaatttgtgcatgcaggagaagcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgcggac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcgga
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggattact
agagcggctattgggagcgatagcatcatctcagcggcctctttccaagaaacgactaaa
gttttgacagaagccagtatcgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagaacgcttgaagatgaccctaaattttga
DBGET
integrated database retrieval system
