Helicobacter pylori Cuz20: HPCU_06180
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Entry
HPCU_06180 CDS
T01894
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpu
Helicobacter pylori Cuz20
Pathway
hpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPCU_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpu03019
]
HPCU_06180
03016 Transfer RNA biogenesis [BR:
hpu03016
]
HPCU_06180
Enzymes [BR:
hpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPCU_06180
Messenger RNA biogenesis [BR:
hpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPCU_06180
Transfer RNA biogenesis [BR:
hpu03016
]
Prokaryotic type
tRNA degradation factors
HPCU_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
ADO04382
UniProt:
A0AB32X966
LinkDB
All DBs
Position
complement(1265110..1267176)
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASATLFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPSMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPTTEIFNVEPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgcagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagattaccgctaccccacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtttctgctttaaacgctgcttcagccactctctttttatcccatatcgct
ccccttaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtctggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
tcaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgagatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgatcattaaggatagaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggattagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagcc
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgagcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttgaaaacgaaggaatttattttaaactacttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaagcgaatcgtggattttggg
gcgtttttaagcttgcctaagggaggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgccttggatttggcttaa
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