Helicobacter pullorum: NCTC13154_00003
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Entry
NCTC13154_00003 CDS
T08673
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hpul
Helicobacter pullorum
Brite
KEGG Orthology (KO) [BR:
hpul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpul03032
]
NCTC13154_00003 (gyrB)
03400 DNA repair and recombination proteins [BR:
hpul03400
]
NCTC13154_00003 (gyrB)
Enzymes [BR:
hpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
NCTC13154_00003 (gyrB)
DNA replication proteins [BR:
hpul03032
]
Prokaryotic type
DNA Topoisomerases
NCTC13154_00003 (gyrB)
DNA repair and recombination proteins [BR:
hpul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC13154_00003 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
VEJ05854
LinkDB
All DBs
Position
1:2564..4882
Genome browser
AA seq
772 aa
AA seq
DB search
MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTNINGLHHLIYEVVDNSIDEAMAGYCNEIS
ITLTKEGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVGV
SVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECKENGTTIEFIPDGTIFEVTE
FQREILAKRFKELAYLNKQITIHFKDERDNFEETYHFEGGLNQFVSDLNKKPLISTIISF
EGLENDVEMQIALAYNDGFDEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYIEANANA
REKDSKITGEDIREGLVAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQKLTFEKLTKFFEE
NPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSISEIYLV
EGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCGIGEDFD
ISKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRFKKGKKEI
YLKDEKALSEYLIENGIENFEFQGIGTKDLIEFFKIVAHYRSTLNELEKRFQLIEIVRHF
IENPDLIGMKNQELYEQIKQKIQSLNFNILNEMLDEQRIHLYVQTDSGLVDIKIDDELFT
HPLFEEAHFVYGKLKERNLEFLQGNDPVEMLEKIEESSKKGADIQRYKGLGEMNPEQLWE
TTMTPENRRLIRVEIKDVEEASDVFSLFMGDEVEPRREYIQAHAKDVKHLDV
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacaatattcaggtagtagtattaaagtactaaagggtttagaggctgtt
agaaaaagaccgggaatgtatattggggataccaatattaatggattgcatcatcttatt
tatgaagttgtagataattctattgatgaggcaatggcagggtattgtaatgaaatttct
atcactctaaccaaagaaggaagtgcgattatcaaagataatggacgcggaatcccagtg
gatattcaccctactgaaaatattcctgctgcaacagtggttttaacagtgcttcatgca
ggtgggaagtttgaccaagattcttataaagtttctggtggtttgcatggagttggagtt
tctgttgttaatgctctttcaaaatctttgcaaatgactatttacaaaaatggacagatt
tatcgccaaaattttgcacaagggattccacaagatgaattaacaatcattggtgaatgc
aaagaaaacggaacaactattgaatttattcctgatggaacaatttttgaagttacagaa
ttccaaagagaaatcttagctaaacgcttcaaagaattagcctatcttaacaaacaaatt
acaatccattttaaagatgaacgagataatttcgaggaaacttatcattttgaaggaggt
ttaaatcaatttgtaagtgatttaaataaaaagcctcttatttctacaattattagtttt
gaagggctagaaaatgatgtagaaatgcaaattgctttagcttataatgatggctttgat
gaaaaagttttgagttttgttaataatattcgaaccatagatggtggaactcacgaatca
ggttttagaatgggtttaactcgcgtaattacaaattatattgaagctaatgcaaatgca
agggaaaaagattctaaaatcacaggtgaagatatccgagagggattagtagcaattgtt
tctgtcaaagtcgtagatcctcaatttgaagggcaaacaaaaggaaaattaggaagttct
tttgtgcgtccaatcgtgcaaaaacttacctttgagaaactcacaaaattctttgaagaa
aatccaaatgaagcaaaagcgattatgcaaaaagcacttttggcagcaagaggaagggaa
gcagccaaaaaagcaagggaactcacacgcaaaaaagaaacttttagtgtaggaacgctg
cctgggaaacttgctgattgccaaagcaaagatcctagcatttcagagatttatttggta
gagggagattctgcgggaggtagtgcaaagcaagggcgagatagggtttatcaagcaatc
ttgcctttgagaggaaaaattttgaatgttgaaaaaagtcgccttgataagattttaaaa
agtgaagaaattaaaaatctcatcactgctcttggttgtgggattggggaagattttgat
attagtaaaattcgctataacaaaatcattattatgaccgatgctgatgtcgatggtagc
catattcaaactcttttgatgacatttttcttccgttatttacgaggcattattgaatca
ggttatttgtatattgcacaaccacctttgtatcgtttcaaaaaaggcaaaaaagaaatt
tatctcaaagatgagaaagctttgagtgaatatttaatcgaaaatggcattgaaaatttt
gaatttcaagggattgggacaaaggatttaatagaatttttcaaaattgtagctcattat
cgctctacactgaatgaattagaaaaacgattccagctcatcgaaattgtgcggcatttt
attgaaaatccagatttgattggtatgaaaaatcaagaattgtatgaacaaatcaaacaa
aaaatccaaagtttgaattttaatatcctaaatgaaatgttagatgagcaaaggattcat
ctctatgtgcaaacagattcaggattggtagatattaaaattgatgatgaattatttact
catccgctttttgaagaagcacattttgtttatggcaaattaaaagaacgcaatttagag
tttttgcaaggcaatgatccagtagaaatgctagaaaaaatagaagaaagtagcaaaaaa
ggcgcggatatccaaagatataaaggtttgggagaaatgaatccagagcaactttgggaa
actacgatgactccagaaaatcgccgtttgattcgtgtagaaatcaaagatgtggaagaa
gcaagtgatgtcttttcactctttatgggagatgaggtcgagccaagacgcgaatatatc
caagctcatgcaaaagatgtaaaacatttagatgtatag
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