Helicobacter pullorum: NCTC13154_01125
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Entry
NCTC13154_01125 CDS
T08673
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpul
Helicobacter pullorum
Pathway
hpul03420
Nucleotide excision repair
hpul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13154_01125 (uvrD)
03430 Mismatch repair
NCTC13154_01125 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpul03400
]
NCTC13154_01125 (uvrD)
Enzymes [BR:
hpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13154_01125 (uvrD)
DNA repair and recombination proteins [BR:
hpul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13154_01125 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCTC13154_01125 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
DUF1877
ResIII
Motif
Other DBs
NCBI-ProteinID:
VEJ07929
LinkDB
All DBs
Position
1:complement(1120394..1122382)
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AA seq
662 aa
AA seq
DB search
MAPSGYNLVIASAGTGKTSTIVGRISHLLESGITPNEILLLTFTNKAAQEMLARLELRFD
SKIVKQIEAGTFHAVAYRYLKSKNSIILKQPRELKVLFKSLYDRRVFLNVSQTPPYGANY
LYDLFSLYQNATINEDFSSWLEKRNAEQMQYVEIYLDVWEEFRNLKKEYHYADYNDLLIF
YKEEILKDKLFFKEILVDEYQDTNPLQDSILQALNPPSIFCVGDYDQSIYAFNGADISII
GSFKERYPNGNIYSLTKNYRSTEPILNLANRVIEKNPRIYPKTLEVVKTQNFGMPTLLVY
DELFLQYQGIANKIKLSNRPYKEVAVIFRNNSSADGIEASLREIGIPTRRKGGISFFDSK
EVVYMLNLCSLLYNPKDMMSFIHVLSHIKGVGNAMAKDIYEALLVLGDGNPVSGILKPNK
EIKEPYKKKIQNTQLGLFDDFFAMGNVARFSYLDSNFRDNPVLSHSKLTKEGAEFLNALY
EFFSSFGVSDKPYYLISKAREFPIFKMVAQKLAKERAITKEGGINQEKYQESLERIERKI
SLLRDLASHYQDIGRFLNAMILGSSEMSEGEGVNLLSIHASKGLEFSEVYIVDLMEGRFP
NKKLMNQGGSLEEERRLFYVAVTRAKENLYLSYAKKDVMKNISYEGSIFLYEAGMLHKDR
QV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
ttggctcccagtggttataatcttgtaattgcatcagcaggcactgggaagacttctaca
atcgtagggagaatctcgcatttattagaaagcgggattaccccaaatgagattttactg
ctcacatttaccaacaaagctgctcaagaaatgcttgctcgcttggagttgcgttttgat
tccaaaattgttaaacaaattgaagcaggaacttttcatgcggttgcataccgatactta
aaatccaaaaattctattatcttaaagcaaccaagagagcttaaagtgctttttaaaagc
ctgtatgatagacgagtgtttttgaatgtctcccaaactcccccttatggagcaaattat
ttgtatgatcttttctctctttatcaaaatgcaactatcaatgaggatttttctagctgg
cttgaaaaaagaaatgcagaacaaatgcagtatgtagagatttatttggatgtttgggag
gaatttagaaatcttaaaaaagaatatcactatgcagattataatgatttgctaattttt
tataaagaggaaattttaaaagacaaactcttttttaaagaaattttggtagatgaatac
caagatactaatccgctacaagattctattttgcaggctttaaatcctccttctattttt
tgtgtaggggattatgatcagagcatttatgcttttaatggtgctgatataagcattatt
ggaagtttcaaagaaagataccctaatggaaatatttatagtttgacaaaaaattatcgt
tcaaccgaacctattttaaatcttgcaaatcgagtgattgaaaagaatcctagaatctat
cccaaaactttagaagtggttaaaacgcaaaattttggaatgccaacattgcttgtgtat
gatgagttatttttgcaataccaaggcatcgctaataaaattaaactctctaatcgcccc
tataaagaagtagcggtaatttttagaaacaattctagtgcagatgggattgaagcaagt
ttgagagaaatcgggattcctacgcgtaggaaagggggtataagtttttttgattctaaa
gaagtggtgtatatgcttaatctttgttctttgctttataaccccaaagatatgatgtct
tttattcatgttttaagccatattaagggtgtggggaatgcaatggcaaaagatatttat
gaggctttgctggtattgggagatgggaatcctgtaagtgggattttaaaaccaaataaa
gaaattaaagagccttataaaaaaaagattcaaaatacacaacttgggctatttgatgat
ttttttgcaatgggaaatgttgcaaggtttagttatcttgatagtaactttagggataat
cctgttttgagccattcaaaacttactaaagaaggggcggagtttttaaatgcactctat
gaattttttagcagttttggagtgagcgataaaccttattatttgatttcaaaagcaagg
gaatttcctattttcaaaatggttgctcaaaagttggctaaagaaagggcaattaccaaa
gaaggtgggattaatcaagaaaaatatcaagaatcattagagagaatagagagaaaaatt
tctttgttgagagatttggctagtcattatcaagatattggtagatttttgaatgcaatg
attttgggttcaagcgagatgagtgaaggtgagggggtgaatttgttaagtatccatgca
agtaaggggttggaatttagtgaagtgtatattgtggatttaatggaaggaagattccca
aataaaaaattaatgaatcaaggtggaagtttggaagaagaaagaagacttttttatgta
gcagttacaagggcaaaagaaaatttatatttgagttatgcaaaaaaagatgtgatgaaa
aatatttcttatgaaggctcgatttttctttatgaagcaggaatgctccataaagataga
caagtttag
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