Helicobacter pullorum: NCTC13154_01159
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Entry
NCTC13154_01159 CDS
T08673
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpul
Helicobacter pullorum
Pathway
hpul03420
Nucleotide excision repair
hpul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13154_01159 (pcrA)
03430 Mismatch repair
NCTC13154_01159 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpul03400
]
NCTC13154_01159 (pcrA)
Enzymes [BR:
hpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13154_01159 (pcrA)
DNA repair and recombination proteins [BR:
hpul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13154_01159 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
NCTC13154_01159 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
CarD_TRCF_RID
AAA_11
Motif
Other DBs
NCBI-ProteinID:
VEJ07997
LinkDB
All DBs
Position
1:1156615..1158723
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AA seq
702 aa
AA seq
DB search
MQESYLEQLNPSQKEAVTTTEGALLILAGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLT
FTNKAAQEMQKRALNMIENTTSHPPLLCTFHKFGLLFLKFYIHYLGRKTNFILADSDDTK
KIIKELNAELAPLPLVVSEISRYKNSQISPQEASKNAHNEIYKHIAKVYEKYQESLLQNN
MVDFDDLLLLPIQIFQNHKEVATEISQKYQYIMVDEYQDTNDLQYQLLKYLCTTHQNLCV
VGDDDQSIYSWRGANIQNILNFSKHFQNAKTIKLEENYRSSKHILRAANNLIINNKERLG
KTLKSTLGEGKPIEILHSFDEQEEVRNLCKIIKNLLSNGINPKDIAILFRLNALSRSLEE
GFNREGIPYILVGAIRFYERSEIKDVISYFRVLINPNDDFSLLRILNKPKRGIGKTTIEK
LKNLTQIHLCSIYELFAHPHLQESLQKEIGKKAHTTIKDFFGILKDLQESHKQSSLRFLD
DFEEKIGLCNAFLQNNDEIDRVSNIEEFYGLYREYIKQNPLMELEDFLNELALRSDQEDM
EMRQEKKEVEGISCMSVHSSKGLEFDYVFIIGLEEGFFPMVREDSNIQEERRLGYVAFTR
AKKELYLSYVDSRFYRGNRTNILPSRFLEESGVLKNSYKTFKKENTTITLEDSGFKKGDC
VVHKIFGAGRILEITKSEKETKLKINFGGLFKEILSDYVTKV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatcctatttagagcaactcaacccctctcaaaaagaagcagttaccactact
gaaggtgctttattgattctagcaggtgctgggagtggcaaaacaaaaactattacaact
cgcttagcctatcttatcgatgaagttgggattccaccaagcaacactttaacactcact
tttaccaataaagccgcacaagaaatgcaaaaaagggctttaaatatgatagaaaacacc
acatctcacccgcctttactctgcacttttcacaaatttggtttattatttttaaaattt
tatatccattacttaggacgcaaaacaaactttatcctagctgacagcgatgatacaaaa
aaaatcatcaaagaattaaacgccgaacttgcccctttgcctttggttgttagtgagatt
tcgcgttacaaaaattctcaaatttctccacaagaagcctcaaaaaatgcacacaatgaa
atttacaagcatatcgcaaaagtttatgaaaaatatcaagaatctcttttgcaaaacaat
atggtagattttgatgatttacttttattgcctatacagatttttcaaaaccacaaagaa
gttgccactgaaattagccaaaaataccaatatattatggttgatgaataccaagatacc
aatgatttgcaatatcaacttttaaaatacctctgcaccacacaccaaaacctttgcgtt
gttggcgatgatgaccaaagcatttatagctggaggggtgcaaatatccaaaatatttta
aatttttctaaacattttcaaaatgcaaaaaccattaaattagaagagaattatcgctca
agcaaacacattttaagggcagcaaacaatcttattataaacaacaaagaacggctaggc
aaaaccctcaaaagtactttgggagaaggcaagcctattgagattttgcattcttttgat
gagcaagaagaagtaagaaatctctgcaaaatcatcaaaaatctactctctaatggaatt
aatcccaaagatattgctattttatttcgtctaaatgccctctcacgctctttagaagaa
ggttttaatcgcgaagggattccttatatcttagtgggtgcaatccgcttttatgaacgc
agtgagattaaagatgtaattagctattttagggttttaatcaaccccaatgatgacttt
tcccttcttagaatcttaaataaacccaaaagaggcataggcaaaacgaccattgaaaaa
ttaaaaaacctcacacaaatccacctttgcagtatttatgaactctttgcacaccctcat
ttgcaagaatctttacaaaaagaaattggcaaaaaagcccatacaaccatcaaagatttt
tttggaattttaaaagatttgcaagaatctcataaacaatctagcctaagattccttgat
gattttgaagaaaaaatcggtctttgcaatgcttttttgcaaaataatgatgaaattgat
agggtaagcaatatcgaggaattttatggattataccgagaatatatcaagcaaaatccc
cttatggaattagaagattttctaaacgaattagctctaagaagtgatcaagaagatatg
gaaatgagacaagaaaaaaaggaagtggaaggcatttcttgtatgagcgtgcattctagc
aaaggattagagtttgattatgtttttatcattgggcttgaagagggatttttccctatg
gtaagagaagatagcaatattcaagaagaacgcagattaggttatgtagcttttacaaga
gccaaaaaagagctttatttaagctatgtggattcaagattttatcgtggcaatcgaacc
aacattctaccctcaagattcttagaagaaagtggagtcctaaaaaattcctacaaaact
ttcaaaaaagaaaataccacaattaccctagaagattctggatttaaaaaaggcgattgt
gtcgtacataaaatctttggagcaggaagaatcctagagattacaaaaagcgagaaggaa
acaaaattaaaaatcaattttggtgggctttttaaagaaattttaagtgattatgtaaca
aaagtataa
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