Helicobacter pullorum: NCTC13154_01238
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Entry
NCTC13154_01238 CDS
T08673
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpul
Helicobacter pullorum
Pathway
hpul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13154_01238 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpul03019
]
NCTC13154_01238 (pnp)
03016 Transfer RNA biogenesis [BR:
hpul03016
]
NCTC13154_01238 (pnp)
Enzymes [BR:
hpul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NCTC13154_01238 (pnp)
Messenger RNA biogenesis [BR:
hpul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC13154_01238 (pnp)
Transfer RNA biogenesis [BR:
hpul03016
]
Prokaryotic type
tRNA degradation factors
NCTC13154_01238 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
S1_RRP5
PNPase
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
VEJ08139
LinkDB
All DBs
Position
1:complement(1244184..1246328)
Genome browser
AA seq
714 aa
AA seq
DB search
MGQAILSFLEKEEKYIFDKFAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQY
IEKAYAAGKFPGGYIKREAKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILVLSADQD
ADLQLLALNAASAALYVSEIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVN
EDLLMIEMRTFGGIKTQEGQAIFSANELQEEEMIEALEIAKNAISQKSKLFVEHFKDYIK
PLLNLEQTRKTYVCQKILEYIQSEHLGELKGIIQSLSKTERHSLLMAFARKIQKEWEEKY
PQDTQDLSKRTLETILKIKREIIRAMVLEESTRADGRGLKEVRPISIDTNFLPNAHSSVL
FTRGQTQALVVATLGGDMDAQSYELLTDKASSKERFMVHYNFPPFSVGEASSISAPGRRE
LGHGNLAKRALEASVINGDMRTIRLVSEILESNGSSSMATVCGGSLALVAAGIECTSLVA
GVAMGLVCENDKYAVLTDIMGLEDHDGDMDFKVAGSRHGITAMQMDIKLGGLNMQILKDA
LNQAKEARNHILNLMEEAREKIILNESVLPSSQIFSIEPSKIIEVIGQAGKTIKEIIEKF
GVAIDLNRENGEVKVSGSNKEKVEAAKEHILKITKNLQDIYKVGDIYQGKVKKVVEFGAF
VELPEGYDGLLHISKITNSRDEKASDVLSVGEMVEVEVLSLNKNKVELGLIKKL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctattttgtcttttttggaaaaagaagagaagtatatttttgataaattt
gccaaacaatgtagcggaagtgtatatcttcaaagtgggaataatgtcgtattagccact
gttgctattgatacacaagaagtagtggaagaagattttttgcctttaacggtgcagtat
attgaaaaagcttatgcagcagggaagtttcctggaggatatatcaaaagagaagcaaaa
ccgggagattttgaaacattaagtgctagaattgtagataggagtttgcgaccacttttt
cccaaagggtattgctatcctactcaaattaccattttggttttaagtgcagaccaagat
gcggatttgcaacttttggcattaaatgcggcaagtgctgcactttatgtgagtgagatt
ccactttattctcctgtgagtgctgttaggattggcaaaataggagataattttgtaatt
aatccgagtttaaagcaattagaagaaagttcattagatttatttgtgagcggtgtgaat
gaagatttgttgatgattgaaatgcgcacctttgggggtataaaaacacaagaagggcag
gctatttttagtgcaaatgaattgcaagaagaagaaatgatagaggctttggagatagca
aaaaatgcaatttcccaaaaaagtaagttgtttgtagagcattttaaggattatattaag
cctttattgaatttagaacaaacaagaaaaacttatgtttgtcaaaagattttggagtat
attcaaagtgagcatttaggggagttaaaaggtattatccaaagtctttcaaaaacagag
agacatagccttttgatggcttttgctagaaaaattcaaaaagaatgggaagaaaaatat
ccgcaagatactcaagatctttcaaaaaggacattagagacgattttgaaaatcaagcga
gagattattcgagcgatggttttagaagaatccacaagagcagatggtagagggctaaaa
gaggtgcgtccaattagcattgatactaattttttgccaaatgctcattctagtgtgctt
tttacaagagggcaaactcaagcgttggtggttgcgactttggggggagatatggatgct
caaagttatgaattattaaccgacaaagcatcttctaaagaacgctttatggtgcattat
aattttccgccttttagtgtaggggaagcaagtagtatttcagcgcccggaagaagagag
ttagggcatgggaatcttgccaaaagagcgttagaagcaagtgttatcaatggagatatg
agaacgattcgccttgtttctgaaattttggaatccaatggctcttcttctatggcaacg
gtttgtggaggctctttggctcttgttgcagcagggattgaatgcactagtttggttgct
ggagtggcaatgggacttgtgtgtgagaatgataagtatgcggtattgacagatattatg
ggtttagaagaccatgatggagatatggattttaaagtggctggttctaggcatgggatt
acagcaatgcagatggatattaagttgggtgggcttaatatgcaaattttaaaagatgca
ctcaatcaagcaaaagaagcacgaaatcacattttgaatttaatggaagaagcaagagag
aaaatcatactcaatgaatcggtattgccaagctcacaaattttttctattgaacctagt
aagattattgaagtcattggacaggctggaaaaactatcaaagaaattatagaaaaattt
ggtgttgcaatagatttgaatcgcgaaaatggcgaggttaaggtaagcggaagcaataaa
gaaaaggtagaagccgctaaagagcatattttgaaaattaccaaaaatctacaagatatt
tataaagtaggggatatttatcaaggcaaagtaaaaaaggttgtagaatttggggcattt
gtagagttgccagagggctatgatggattgttgcacatttcaaaaatcactaacagccga
gatgagaaagcttcagatgtcttgagtgtaggtgaaatggtggaggtagaagtcctttct
ctcaataaaaataaagtcgagttagggttgattaagaaattataa
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