Helicobacter pullorum: NCTC13154_01370
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Entry
NCTC13154_01370 CDS
T08673
Symbol
rnjA
Name
(GenBank) putative metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpul
Helicobacter pullorum
Pathway
hpul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13154_01370 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpul03019
]
NCTC13154_01370 (rnjA)
Messenger RNA biogenesis [BR:
hpul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13154_01370 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4755
Lactamase_B_6
Pox_polyA_pol_N
Motif
Other DBs
NCBI-ProteinID:
VEJ08265
LinkDB
All DBs
Position
1:complement(1385258..1387234)
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AA seq
658 aa
AA seq
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MEEKETQNNTQNTNSQKEPNKRRFKPRNQQDRTREEKQGQEGQSRNHYRHKKSQNNSGQN
GEKFHNRNGGNREVNQSNLELRKAVEVNAKVHQNSLTTHSQVQFNPNGKVRITPIGGLGE
IGGNMTVIETQNSAIIIDAGMSFPDGDMHGIDILVPDFSYLEVIKDKIAGIVITHAHEDH
IGAMPYLFKKYQFPIYGTPLPLGLIGSKFDEHGLKKYRSLFRAVEKRKPIRIGEFEIEWI
HITHSIVDSSALAIKTEAGVIFHTGDFKIDHTPIDGYPTDLNRIAYYGEQGVLLLLSDST
NSHKAGYTPSEASVGPAFDMLFSRAKGRVIMSTFSSNIHRVYQAIQYGLKYGRKISVIGR
SMEKNLEIARTLGYIDLPQNIFIEAHEVAKYADEEVLIVTTGSQGETMSALYRMATDEHR
HIKIKPSDIVILSAKAIPGNEGSVSNILNFINKAGAKVYYQDFSEIHTSGHAAQEEQKLM
LRLVKPKFFLPVHGEYNHILKHKETAISCGVDEKNIYLMEDGDQIEIAHNYLRKVRSVKT
GKIYIDNQINAFVANDVVLDRQNLAENGIVIVVVQIDKAKNAVIGKPRIQTMGIIANKDI
LSFNKEIEEFFSLFVKNCKKELYSSQKAMENEIRNALRKLMFKKTKRYPTIMPNVIFS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaagaaacgcaaaataatacacaaaatacaaattcacaaaaagagccaaat
aaaaggcgttttaaaccacgaaaccaacaagatagaacaagagaagaaaaacaagggcaa
gagggacaaagtcgcaatcactataggcacaaaaaatctcaaaataattctggacaaaat
ggggaaaaattccacaatagaaatggtggaaatagagaggtcaatcaatctaatttggaa
ttaagaaaagctgttgaggtgaatgcaaaagtccatcaaaattctttgactacacactct
caagtgcaatttaatccaaatggaaaggtaagaatcactcctattggcgggcttggtgaa
attggtggaaatatgacggtgattgaaactcaaaattctgcaattattattgatgcagga
atgagtttccctgatggcgatatgcacgggatagatattttggtaccagattttagctat
cttgaagtgataaaagacaaaattgcagggattgtgattacccatgcacatgaggatcat
attggtgcgatgccttatttgtttaaaaaatatcaatttcctatttatgggactccgctt
cctttgggattgattggttctaaatttgatgagcatggtttaaaaaaatatcgctcactt
tttcgtgcagtagaaaaaagaaagcctattagaattggtgagtttgagattgaatggata
cacattactcattcaattgtagattctagtgcattggctatcaaaacagaggctggagtg
atattccatacaggtgattttaaaatcgaccatacacccattgatggttatccaacagat
ttgaatcgaatcgcatattatggagaacaaggcgttttattactacttagcgattctaca
aactctcataaagcaggatatactcctagtgaggcaagcgttggacctgcatttgatatg
ttgttttcacgagctaaggggcgtgtgattatgagtacttttagctctaatatccatcgt
gtttatcaagcaatccagtatggattgaaatatggtagaaaaatctctgtaattggacgc
tctatggagaaaaatttggaaattgcaaggactttgggttatatagatttgccacaaaat
atttttattgaagcacacgaagtggcaaaatatgccgatgaagaagtgttgattgttaca
acaggtagccaaggggagacaatgagtgctctttatcgtatggcgactgatgaacatagg
catattaaaatcaagccaagcgatattgtgatactttcagcaaaagcgattccgggcaat
gaaggttctgtttcaaatattttgaattttattaataaagctggtgcaaaagtgtattat
caagattttagtgagattcatacaagtgggcatgctgcacaagaagagcaaaagttgatg
ttaagacttgtgaagccaaaattcttcttacctgtgcatggagagtataatcatatttta
aaacacaaagaaacagccatttcttgtggggttgatgaaaaaaatatttatcttatggaa
gatggagatcaaatagaaatcgcacacaattatttacgcaaagtaagaagtgtgaaaacc
ggtaaaatctatattgataatcaaattaatgcctttgttgcaaatgatgtggtgctagat
aggcagaatcttgctgaaaatggtatagtgattgtagtcgtccaaatagataaggcaaag
aatgcagtcatcggtaagccaagaatacaaacaatgggaatcattgcaaataaagatatt
ttgagctttaataaagaaattgaggaatttttctcactttttgtgaaaaattgcaaaaaa
gaactttatagcagtcaaaaagctatggaaaacgagattcgcaatgctttaagaaagctg
atgtttaaaaaaaccaagcgttatcctactattatgcctaatgtaatttttagctag
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