| Entry |
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|---|
| Symbol |
rpoBC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
| K13797 | DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] |
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| Organism |
hpul Helicobacter pullorum
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:hpul00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13154_01500 (rpoBC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:hpul03021]
NCTC13154_01500 (rpoBC)
03400 DNA repair and recombination proteins [BR:hpul03400]
NCTC13154_01500 (rpoBC)
Enzymes [BR:hpul01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13154_01500 (rpoBC)
Transcription machinery [BR:hpul03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13154_01500 (rpoBC)
DNA repair and recombination proteins [BR:hpul03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13154_01500 (rpoBC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(1520483..1529128)
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| AA seq |
2881 aa
MPISLKSGNRLRVDFTKIPQNIAVPNLLQLQRSSYEAFLKSQDNNESGIEKVFKSIFPIH
DTQNRISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGVKDI
KEQNIFVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESSTASNKLVYTGQIIP
DRGSWLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPLLTIKHKSGKYF
IPFDPEEFIGRVDFDIRDTKGKLILAAGKRLTAKKAKALKEEKLNMIEYPIDILANRYLA
EPIIDKESGEILFDALTLMDDSKLKKLAELGINEFVIANDLASGVDSSVINAFIADAESL
KLLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYDLTRVGRMKMN
HKLDISVPDYVTVLTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAIGELLANELHL
GLVKMQKAIRDKLSTISSGLEELMPHDLINSKMITGTILEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNEL
GFIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTVLTNDNVIKEDIIEVRKDGEIIL
MESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLCPDAPVVGTGI
EKIVSRDSWESVKATRGGVVEKVDAKNIYILGEDENGAFIDHYSLQKNLRTNQNTSFSQK
PIVKAGDVVQAGDVIADGPNMDKGELALGKNIRVAFMPWNGYNFEDAIVVSEKLICNDAF
TSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVGKAS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDKRAIVA
YEEEKARLDLEHHDKLLMLDREESLRIGSILSKEKLASNVKIGDKEYKKGSVIPKEDLEN
VNRFVMGTIIKGYSKEIQSKYDALKANFLEQKKNLSQEHEEKLSIIEKDDILPSGVVKLV
KIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRMNIG
QILEVHLGLVGKNLGEQISLVFEEEKGKWIGKLRDKMQEIAETSGMKEIKTFLNSLSDED
LLTYARDWSKGVKFATPVFEGVNAKEFEKLFALAKIDSDGKTELYDGRTGEKMMERVNVG
YMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDVEGRVKAYKAITRGESVKESEIPETFYVLTKELQSLALDVNVFAKNKEGVN
EPILIKEDNRPSDFNAFQLLLASPEKIRSWSHGEVKKPETINYRTLKPERDGLFCAKIFG
PVRDYECLCGKYKKMRYKGIVCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNSLPSR
IGTLLGVKMKDLERVLYYEAYIVKQPGEAFYDNEGTKPVAKYDVLNEEQYQNLSQRFEHT
GFVAQMGGEAVKELLEGIDLVDLIAELKEAIKTTNSEAKKKTIIKRLKVVESFVVSGGQN
RPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLIELDAPEIIV
RNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGR
SVIVVGPNLRMDQCGLPKNMALELFKPHILSKLEEKGYATTLKQAKKMIERKSSEIWECL
QEIVEDYPVMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHVPL
SQEAITECKLLMLSSMNILLPASGKAVTVPSQDMVLGLYYLSLEKDNSKGEHKLFSNIDQ
IHIALEAGVVEISSKVRVYVEDRIVNTTIGRMILKSILPDFVPMHLWNKVLKKKDIATLI
DYVYKEGGVGITASFLDNLKNLGFKYATKAGISISADDIIVPSNKNKVIEGAKKKVKDIQ
AQFGAGLLTEQERYNKIIDVWTDTNNALGNEMMKLIENDKAGFNSIYMMADSGARGSAGQ
IRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFISTHGARKGLADTALKTANAGYL
TRKLIDVSQNVKIVMDDCGTNEGVEITDITIGSELIESLDERIFGRVIAENIIDPITNEV
LISEGVLIDEEKARKVKEAGVKSVIIRTPVTCKAEKGVCAKCYGLNLGESRISKMGEAVG
VVAAQSIGEPGTQLTLRTFHIGGTASRSQEERQVVADKEGFIRYYNVKTYKNREGKRIIS
NRRNAAILLVEPKIKAPFEGELKVDIVHDEVIISVIGKKETAKYTLRKSDVAKPNELAGV
TGKIEGKFYIPYPSGHYVRDEGSIVDIIKDSWNIPNRISYASELKVEDNAPITQKIYAKE
EGIVKYYYLQGDHLERYRALKKGEKITEKGVFAVVADEYDQEAARHYIARDSVIEVEDNQ
RVTKSTLIASPENDEQIVIADWDPYSNPIISEEAGTIKFEDIIPGLTVSEQTDKLTGQTR
LVVNEYIASAYKPTLVLSTAKGGLIRYALDPKTAIFVADGAQVEMADILAKTPKALVKSK
DITGGLPRVSELFEARKPKDPAVLAEIDGIVSFGKPIRGKEKIIITANDGRVAEYLIDKS
KQILVHDGEFVHAGEAMTDGVVASQDILRIGGEKELYKYIVSEVQQVYRRQGVSIADKHI
EIIVSQMLRQVRIYDSGNTKFIEGDLVSKRHFREENARIIRMGGIPAIAEPVLLGITRAA
IGSDSVISAASFQETTKVLTEASIAAKIDNLEDLKENIVLGRMIPVGTGIYKSKKVKIKE
N |
|---|
| NT seq |
8646 nt +upstreamnt +downstreamnt
atgccaataagtttaaaatccggaaatagattgagagttgattttactaaaataccgcaa
aatatagcagttccaaatttgcttcaattgcaaagaagtagttatgaagcttttttgaaa
tcacaagataacaatgaatcaggtattgaaaaagtttttaagtctatttttcctatacat
gatacacaaaatcgtattagtcttgaatatgcaggttgtgaatatggaaagccgcgttat
acggtaagagaagctatggaaaggggtttgacttattcgattcctttgaaaatcaaaatc
cgtttagtgctttgggagagagatgaaaagacgggtgaaaaacttggcgtcaaggatatt
aaagagcaaaatatttttgtaagagaaattccattaatgacagataggacaagttttatt
attaatggagttgaaagagttgttgtaaatcaacttcatagaagcccgggagttattttt
aaagaagaagaatcttcaacagcttctaataaacttgtttatacagggcaaattatccct
gatagaggctcttggctgtattttgaatatgatgccaaagataccctttttgtgcgtgtc
aataaaagaagaaaaattcctgttacgattctttttagagcattagggtattcaaagcaa
gatattttaaaaatgttctatccgcttttgacaattaaacataaatctggaaaatacttc
attccatttgatccagaagaatttatagggcgtgtagattttgatattagagatacaaaa
ggaaaattgattcttgcagcagggaaacgcttgactgcaaaaaaggcaaaagcattaaaa
gaagaaaagcttaatatgattgaatatccaattgatattttggcaaatcgttatcttgca
gaacctatcattgataaagagagtggtgagattctttttgatgctttgactttgatggat
gattcaaagcttaagaaattagcagagcttggcattaatgagtttgtaattgcaaatgac
ttggcaagtggcgtggattcttctgtgattaatgcttttattgccgatgcagaatctctc
aagcttcttaagcaaactgaaaaaattgataatgaaaatgatttggcaacaatccgtatt
tataaagtaatgcgaccaggagagcctgtaacaaaagaagcggctaagcaatttgtgcaa
cagctattctttgacccagagcgttatgatttgactcgagtagggcgtatgaagatgaat
cataagcttgatatttctgtgccagattatgtgactgttcttactcatgaagatattatt
aaaaccgtgcgttatcttatccatgtgaaaaatggacaaggcagaatcgatgatagggat
cacttaggaaatcgtagaatccgtgctattggagagcttttggcaaatgagcttcatttg
ggattagtaaaaatgcaaaaagcgattcgcgataagctttcgacaattagtagcggttta
gaggagcttatgccacatgatttgattaattccaagatgattacaggaacgattttggaa
ttttttactggtgggcaactttctcaatttatggatcaaacaaatccactttctgaagtt
acacacaaaagaagattatctgcacttggagaaggcggtttggtaaaagagcgagcaggc
tttgaagtgcgtgatgtgcatccaacgcattatggaagaatctgtcctattgaaactcca
gaggggcaaaatatcgggttgattaataccttatctacttatgcgaaggtaaatgagttg
ggctttattgaagcaccttatagaaaggtcgtggataaaaaagttacagatgagattgtg
tatttaactgccactcaagaagagggggctgtaattgctcctgcaagcactgttttgact
aatgataatgtaatcaaagaagatattattgaagtgcgtaaagatggtgaaattatcctt
atggaatcttctaaggtagaattaattgaccttagtccaagaatggtggtaggtgttgct
gctagtttgattccatttttggaacacgatgatgcaaaccgtgctttgatgggttcaaat
atgcaacgccaagctgttcctttattgtgccctgatgcacctgtggttggaacagggatt
gaaaaaattgtatcaagggattcttgggagagtgtaaaagcaacgcgtggcggtgttgtt
gaaaaagtagatgctaagaatatttatattttgggtgaagatgaaaatggtgcattcatt
gatcattattcccttcaaaagaatctaagaaccaaccaaaatacttctttttctcaaaaa
ccaattgtcaaagctggtgatgtagtgcaagctggcgatgtaatcgcagatggtccaaat
atggataaaggagagcttgcattaggaaagaatattcgtgtagcctttatgccatggaat
ggttataattttgaagatgctattgttgtgagtgaaaagcttatttgcaatgatgctttt
acttcaatccacatttatgaaaaagagattgaagcaagggaactcaaacatggtgtagag
gaaatcacaagagatattccaaatattcgtgaagaagaattagctcatcttgatgagagt
ggaatcgttaaaatcgggacttatgttacaggtggaatgatattggtagggaaagcttct
ccaaaaggtgaagtaaagccaactccagaagagagattattaagagcaatctttggcgaa
aaagcagggcatgttgtaaataaatctttgtattgtcctccaagtttagaagggacagta
gtagatgtcaaaatttttacaaaaaaaggttatgacaaagataagcgcgctatcgtcgct
tatgaggaagaaaaagctcgtttggatttagagcatcacgataaacttttaatgcttgat
agagaagaaagcttaaggattggttctattctttctaaagaaaaacttgcaagcaatgta
aaaataggcgataaagaatacaaaaaaggaagtgtaatcccaaaagaagatttagaaaat
gtaaatcgctttgtaatgggaacaattattaagggatattcaaaagagatacaaagcaaa
tatgacgcactcaaagctaatttcttagaacaaaagaagaatctaagtcaagagcatgaa
gaaaagctttctattattgaaaaagatgatattttgccaagtggtgttgtcaaacttgtc
aagatttatgtggcaacaaaacgcaaattaaaagtcggcgataaaatggcagggcgacat
ggtaataaagggattgtgtctaatattgtcccagaagtcgatatgccttatactaaagat
gggcgtccagtagaaattgtattaaatcctctaggggtgcctagccgtatgaatattggg
caaattttggaagtccatttggggttggtagggaagaatctaggcgaacaaatctctctt
gtgtttgaagaggaaaaaggtaagtggattggcaaattaagagacaaaatgcaagaaatt
gcagaaacttcaggaatgaaagagattaaaactttcttgaattctttgagtgatgaggat
ttgctaacttatgcacgagattggagcaagggtgtaaaatttgctacccctgtttttgaa
ggcgttaatgcaaaagaatttgaaaaactctttgcattggctaaaattgattcagatggt
aagacagaactatatgatggtagaaccggtgagaaaatgatggagcgtgtgaatgtaggg
tatatgtatatgctaaaacttcaccatcttgtagatgaaaaagtgcatgcaagaagtacg
ggtccatatagtcttgtaacacaacaaccagtgggtggtaaggcactctttggtggtcag
aggtttggagagatggaagtttgggcattagaagcttatggtgcagcccatactttaaaa
gaaatgctaacgatcaaatcagatgatgtcgaagggcgtgtaaaagcttacaaagctatt
actaggggggagtctgttaaagaatcagaaataccagaaactttctatgttttaactaaa
gaattgcaaagccttgcattagatgtcaatgtatttgcaaagaataaggaaggggtgaat
gaaccaatccttattaaagaagataatcgtccaagcgattttaatgcatttcagcttttg
cttgcaagtccagagaagattcgcagttggagtcatggagaggttaaaaagccagaaaca
attaactatcgcacattaaagccagagcgtgatggattgttttgtgccaaaatctttggt
ccagtaagagattatgaatgcctttgtggaaaatacaaaaaaatgcgttacaaaggcata
gtgtgtgaaaaatgtggagtggaagttacaagttccaaagttcgtcgttcaagaatggga
catatcgagctagtaaccccagtagcgcatatttggtatgttaattcacttccaagcaga
attggaacattgcttggtgtcaaaatgaaagatttagagcgtgtattgtattatgaagct
tatattgtcaagcaacccggagaggctttttatgataatgaaggaacaaaaccggttgca
aaatatgatgtgctcaatgaagagcaataccaaaatctttctcaaagattcgagcataca
ggttttgttgcgcaaatgggtggagaggctgtcaaagaattgctagaagggattgatttg
gtggatttgattgccgagctaaaagaagcaattaaaacaactaattcagaagccaaaaag
aaaactattattaagcgtttaaaagtggtagaaagtttcgtggtttctggtgggcaaaat
cgtccagagtggatgatgcttactgttcttcctgtgttgccaccagatttgcgtcctttg
gttgcacttgatggtggaaaatttgcagtaagtgatgtcaatgacttgtaccgaagggta
attaacagaaatcaaagattaaagagattaattgagcttgatgcaccagagattattgta
agaaacgaaaagagaatgttgcaagaagcggtagatgcactttttgataatggtagaaat
gcaaatgctgtcaaaggtgctaataagcgtccattgaaatctctttctgaaattattaaa
ggtaagcaagggcgattccgccaaaacttacttggaaagcgtgtggatttctcgggaaga
agtgttattgttgttggtccaaatttgagaatggatcaatgtggattgcctaaaaatatg
gctttagaattatttaaaccacatattttatctaagcttgaagagaaaggttatgcaaca
actctcaaacaagccaaaaaaatgatagagcgcaaaagcagtgaaatatgggaatgtttg
caagagattgtagaagattatccagtaatgttgaatcgtgcgccgactttgcataagcaa
tctattcaagctttccatcctaagcttattgatggaaaggcaattcaattgcatccatta
gtttgtgctgcatttaatgcagacttcgatggtgaccaaatggcagtgcatgttccgctt
tctcaagaggcaattacagaatgcaaattattaatgcttagttctatgaatattttgctt
cctgcaagcggtaaggctgttactgttcctagtcaagatatggttttgggtctttattat
ctttctttggaaaaagacaattccaaaggagagcataagcttttctctaatattgatcaa
attcatattgcactagaagcaggggtagtcgaaattagctccaaagtaagagtgtatgtg
gaagataggattgttaatacaacaattggcagaatgattctaaaatccattttgcctgat
tttgttccgatgcatttgtggaataaggtattgaagaaaaaagatattgcaaccttgatt
gattatgtgtataaagaaggtggagttgggattactgctagcttccttgataacttaaaa
aatttaggtttcaaatatgcaaccaaagccggtatttctatttctgcagatgatattatt
gtcccaagcaataaaaataaagtcattgagggtgcaaagaaaaaagtaaaagatattcaa
gcacaatttggagcgggcttattgacagagcaagagcgttataataagattattgacgtt
tggacagatactaataatgctttgggtaatgaaatgatgaagcttattgaaaatgataag
gctggattcaactccatttatatgatggcagattctggagcaagaggtagtgcagggcag
attcgacagctttctgcaatgcgtggtttgatggcaaagcctgatggaacgattattgag
acacctattacttcaaacttcaaagaaggtttgaatgtgttagagtattttatttcaaca
catggtgcaagaaaaggtttggcagatactgcgcttaaaaccgcaaatgcaggttatttg
acaagaaaactcatcgatgtaagtcaaaatgtgaagattgtaatggatgattgtggcact
aatgagggagttgaaattacagatattactattggtagcgaactcattgaatctttggat
gaaagaatctttgggcgtgttatagcagaaaacattatcgacccaatcactaatgaagtt
cttattagtgaaggtgtgcttatagatgaggaaaaagctagaaaggtaaaagaagcaggt
gtaaaatctgtcattatccgcactcctgtaacttgtaaagccgaaaaaggtgtgtgtgct
aaatgttatggattaaatctcggagaatctagaatttctaagatgggtgaggcagttgga
gttgtggcagcacaatctatcggtgagcccggaacgcaattgacattgaggactttccat
atcggtgggacagcaagcagaagtcaagaagagcgtcaagttgtagctgataaagaagga
tttattcgttattataatgtcaaaacctataaaaatagggaaggcaagcgaattatttcc
aatagaagaaatgctgcaatcttgcttgttgaaccaaaaatcaaagctccatttgaggga
gaattgaaagtagatattgtgcatgatgaagtgattatctctgtgattggcaagaaagaa
actgcaaaatacactttaagaaaaagtgatgtggcaaaaccaaatgagctagcaggtgta
acagggaaaattgaaggaaaattctatattccatatccaagtgggcattatgtgagagat
gagggaagtattgtagatattatcaaagatagttggaatattcctaatcgaatctcttat
gcaagtgaattaaaagtagaagacaacgcaccaattactcaaaaaatttatgccaaagaa
gaagggattgtgaagtattattacttgcaaggcgatcatttagagcgttatagagctttg
aaaaagggcgaaaaaattactgaaaaaggtgtatttgcagtggttgctgatgagtatgat
caagaagcagcgcgtcattacattgctagagattctgtgattgaagtagaagataatcaa
agggtgacaaaaagcactttgattgcaagcccggaaaatgatgagcaaattgtaattgca
gattgggatccttattctaatccgattatatcagaagaggcaggaactattaagtttgag
gatatcattccgggattgactgtttctgagcaaacagacaaattaacagggcaaacaaga
ttggtggttaatgaatatatcgcaagtgcctataagcctactttggtattatctactgct
aagggtgggttgatacgctatgcacttgatcctaaaactgcaatttttgttgctgatggt
gctcaagtagaaatggcagatattctagcgaagactccaaaagcacttgtaaaatcaaaa
gatattacagggggtctcccaagagtttcagagctttttgaagcaagaaaaccaaaagat
cctgcagttttagcggaaattgatggaattgtgagttttggcaaaccaattagaggtaaa
gaaaaaatcattattactgctaatgatggaagagtggcagaatatctcattgacaagtcc
aagcaaattttggtgcatgatggtgaatttgtccatgcaggtgaagcaatgacagatggt
gtagtggctagtcaagatatcctacgaatcggtggagaaaaagagctgtataaatacatt
gtaagtgaggtacaacaagtttatcgccgacaaggggtaagcattgcagataaacatatt
gaaatcattgtttcacaaatgctaaggcaagttcgtatctatgatagtggcaacacgaaa
ttcatagaaggagacttagtaagtaagagacattttagagaggagaatgctagaattatt
agaatgggaggaatcccagcaattgcagaaccagtgcttttgggtattacaagggcagct
attggaagcgattctgtgatttcagcagcttctttccaagaaacaaccaaagttttgaca
gaagcaagtattgcagccaaaattgataatttagaagatttgaaagaaaatattgtatta
gggcgtatgatacctgttggaacgggaatctataagagcaagaaggttaaaattaaggaa
aattaa |
|---|
