Henckelia pumila: 140859883
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Entry
140859883 CDS
T11037
Name
(RefSeq) probable pectate lyase 12 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
hpum Henckelia pumila
Pathway
hpum00040
Pentose and glucuronate interconversions
hpum01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140859883
Enzymes [BR:
hpum01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
140859883
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
140859883
NCBI-ProteinID:
XP_073118592
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Position
4:44227723..44233118
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AA seq
487 aa
AA seq
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MFFRNPIILFCLFSYICSSVSAAGFLNLSLPRQHPDPDAVVQETQRKVNESMSRRSLLLS
TPIIRDQSQCLTGNPIDDCWKCDSNWSANRQRLADCGIGFGQSAMGGKGGRFYVVTDSSD
HDTVNPTPGTLRHAVIQDEPLWIVFQSNMVIKLKHELMFNSYKTIDGRGANVQITGNGCI
TLQYVSNVIIHNVHVYNCMPSGNTNIRSSPTHVGWRGKSDGDGISIFGSRNIWIDHCALS
HCTDGLVDAIMGSTAITISNNYFSHHDEVMLLGHDDQFLPDSGMQVTIAFNHFGEELVQR
MPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPADPSAKEVTKRVDTNEGG
WSDWNWRTDGDIMVNGAFFVPSGGGLSLQYAKASSVEPKSVSLIDRLTMNAGVLGGPRDN
AVSISYGGGATTGGGGTGGGDYFGMSFAGSSAVTLISPTGALFESLQCILILYVTTTNHG
GPLSFFF
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgttttttcgaaatcccattatcctgttttgcctcttctcctatatttgttcctcagtt
tccgctgctggattcttgaatctgagcctccctcgtcaacaccccgaccctgatgctgtt
gttcaagaaacgcagaggaaagtaaatgaatccatgtcaagaaggagtctactgctttca
acaccaataatccgtgatcagtctcaatgtctgacagggaaccccatcgatgactgctgg
aagtgcgactcgaactggtcagccaaccgccagcgactggccgactgtggtatcgggttt
gggcagtcggcgatgggcggcaaaggcggccgcttttatgttgttactgattcctcagat
catgacacagtgaaccctacccctggcactttacgtcacgctgtaatacaagacgaaccc
ttatggatagtcttccaatcaaacatggtcatcaagcttaaacacgagttgatgttcaat
agctataagacgatagatgggcgtggtgccaacgtgcaaatcacgggcaatggatgcatt
actttgcagtatgttagtaacgtgatcatccacaatgtgcatgtttacaattgtatgcca
tcagggaatactaatattcggtcgagccctactcatgttgggtggaggggaaaatcagat
ggcgacgggatctcaatctttgggtccagaaacatctggattgatcactgtgctttgtca
cattgtactgatggattggtggatgccattatggggtcaactgctattaccatttctaat
aactatttttctcaccatgacgaggttatgttgttaggacacgacgatcagttcttgcca
gactccggaatgcaggtgactatagcttttaatcactttggagaggagcttgtgcagagg
atgcccaggtgtaggagaggctacatacatgtggtgaacaatgattttacgcaatgggaa
atgtatgcaataggtggaagtggtaatccgacgattaatagtcagggcaatcgttatact
gcaccggcagatcctagtgctaaagaggttacaaaacgtgtggacacgaacgaaggaggc
tggtccgactggaactggaggacagatggggacataatggtaaacggtgcattctttgtg
ccatcaggcggcggactgagcctgcaatacgcaaaggcctctagtgttgagcccaaatcc
gtgtccctcatcgatagactcacaatgaatgctggtgttcttggtggccccagggacaat
gctgtgagcatatcatacggcggaggggccaccaccggaggaggcggcacgggtggtggt
gattacttcggaatgagttttgcgggcagctccgccgttacactaatatctccgactggt
gcattatttgagtctcttcaatgtattctaattttgtatgtaaccaccaccaaccatggt
ggcccactctcattttttttttag
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