KEGG   Henckelia pumila: 140859935
Entry
140859935         CDS       T11037                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
hpum  Henckelia pumila
Pathway
hpum03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hpum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    140859935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpum03021]
    140859935
Enzymes [BR:hpum01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     140859935
Transcription machinery [BR:hpum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     140859935
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 140859935
NCBI-ProteinID: XP_073118664
LinkDB
Position
4:77356788..77365041
AA seq 1210 aa
MGGSDFTKAGPSGLNEKFSNGTTKDVSDDMDFVLSESDDGDDVVDVGSSLQELGEGSLKT
FCKKASTAFFDEYGLISHQINSYNEFVKYGIQQLFDSIGEIVISPGYDPSKRRDDGWRQA
SLKFGKVTLEKPIFWTGDKFSSDGGKDYLKLLPRHARLQNTTYSSKIRVDARLEVFTENL
ASSDKFKTGVQQQVEKTVLSVHQSDILFGSLPVMVKSDLCNEKGTEKMDCEFDNGGYFII
KGAEKTFIAQEQMCLKRLWVAKDPNWSIAYRSVVRRRKVHVKLVPKVEHISGGEKILSVY
FMATEVPIWILFFALGVSNDLEVVKLIDLDIEDCRVANVLVASIHVADKNYEGFRKADNA
VNHMKKLMQGCKFPPTESVEECFKNYLFPNLKSLGQKARFLAYMVKCLLEACMGLRKVDS
RDDFRNKRLELASELLERELRVHMKHAERRMVKAMQRDLYGDREIQSIEHYLDTSIITNG
LSRAFSTGAWSHPYKRMERISGVVATLRRTNPLQATCDMRKTRQQVSYTGRAGDARYPHP
SHWGKICFLSTPDGENCGLVKNLASLGLVSANVLEKDGLLRKLRQCGMENLVDDTSSLLK
AKQKVFLDGDWVGVVENSESFVAKLRRKRRRMEVPHQVEIKRDEHHCEVRIFADSGRILR
PLLVVRNLKKIKEVKGDYIFQTLLDNGILELIGPEEEEDCQTAWGIRYLFTSEKSRQPVK
YTHCELDCSFLLGLSCGIIPFTNHDHAKRVLYQSEKHSQQAIGFATTNPNARVDTNSHRL
YYPQRPLFRTMLSDCLGKSSYSHQQRGMIPHPEFSNGQCAIVSVNVHLGYNQEDSIVMNR
SSLERGMFRSEHIRSYKAEVESYEGLGKKLKPEDCISFGKTQSKIGRVDSLDDDGLPFIG
ANLQTGDIVIGKHSESGVDHSIKLRHTERGMVHKVVLSANDDGKNFAVVSLAQVRSPCLG
DKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAL
GGALKCATPFSTPSVEDITAQLHRLGFSRWGHEKVYDGRTGEAVRSLIFIGPTFYQRLTH
MAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLLAHGAAANLHERLFTLSDS
SQIHICRSCKNVANVIQRPVFGGHKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMG
ISLKFDTELC
NT seq 3633 nt   +upstreamnt  +downstreamnt
atgggtggatcggattttacgaaagctggacctagtggcctcaatgagaagttttccaat
ggcaccaccaaggatgtttccgatgatatggactttgtgctttctgagtctgatgatggt
gatgatgtcgttgatgttggcagttctctccaagaattaggtgaagggtcgctgaaaact
ttttgtaagaaggcttcgaccgccttttttgatgagtatgggctaataagtcaccaaatc
aattcatacaacgaatttgttaagtacgggattcagcaactgtttgactctattggtgag
attgttatctcgccagggtatgatccatcaaaaaggagagatgatggttggaggcaggca
tctctcaagtttggaaaggtcacccttgagaagcctatattttggactggtgataagttt
tcatctgatggtgggaaggattatttgaaattgttgcccaggcatgcacgtcttcagaat
acgacctactcatccaagatcagagtggatgctcgtcttgaggtttttaccgaaaatctt
gctagcagtgacaagttcaagaccggtgtacaacaacaagttgaaaagacggtgctaagt
gtgcatcagagtgacattctatttggcagcctcccggtaatggtgaaatcagatttgtgc
aatgagaaaggaactgagaaaatggattgtgaattcgacaatggaggatattttattatc
aagggtgctgagaagacgttcattgcacaggagcaaatgtgtctaaaaagactgtgggta
gcaaaagatccgaattggtcaattgcatatcgctcagttgtcagacgaagaaaagttcac
gtaaagttagttccaaaagtggagcacatcagtggaggagagaagatcctatcagtttac
tttatggcaactgaagttccaatctggattctgttctttgccttgggtgtttcaaatgac
ctagaggttgtaaagttgatagatcttgacatcgaagactgcagggttgcaaatgtactc
gttgcatcaattcatgttgctgataaaaattacgagggtttccgtaaggcggacaatgct
gtaaatcacatgaaaaaactcatgcagggttgcaaatttccacctacagagtccgtggaa
gaatgctttaaaaattatctcttccctaacctcaaaagcttggggcagaaggctcggttt
ctggcgtacatggtcaagtgtctcttagaagcttgcatgggacttcgcaaagttgacagc
agggatgatttcaggaacaagaggttggagttggctagtgagctacttgagagagaactg
agagttcacatgaaacatgctgagaggcgcatggtgaaagccatgcaaagggatctttat
ggagatcgggagatacagtcaattgaacactacttggatacttcaatcatcacaaacggt
ctttccagggctttttctactggagcttggtcacatccttacaagaggatggaaagaatt
tctggtgttgtggctactctaaggcgaacaaatcctttgcaagcgacttgtgatatgagg
aaaacacgccagcaggtctcatacacagggagggctggtgatgctagatacccccaccca
tctcactggggtaagatttgcttcctttctacacctgatggagaaaattgtgggctagtt
aagaatctagcaagtttgggtcttgtcagcgctaatgtattggagaaggatggtcttctt
cgaaaattacgccagtgtggaatggaaaatttggttgatgatacttcaagtttgctcaaa
gcgaagcaaaaggtttttttagatggagattgggttggagtggttgaaaattctgagtca
tttgttgctaagctaaggcgtaaacgtcgcaggatggaagtgcctcatcaggttgaaatt
aagagagatgagcatcattgtgaagtgcgcatatttgctgattctggaaggatactccgt
cctcttttagttgttcgaaatctaaagaagattaaagaagtaaaaggagattatatattt
cagactctattggataacggaatactagaactaataggaccagaagaagaggaagattgc
cagactgcatggggaattagatacctttttacctctgaaaaatcaaggcaacctgtgaaa
tatacgcactgtgagttagattgttcgttcttattagggctaagctgcggaatcatacct
ttcaccaaccatgatcatgcaaagagagttctttatcagtctgagaagcactctcagcaa
gcaattggatttgctacaacaaatccgaatgccagagttgataccaattctcatcggctg
tattacccccagaggccacttttccggacaatgctttctgattgtctcggaaaatcatca
tattctcatcagcaacgggggatgatcccacaccccgagttctctaatggccagtgtgcg
atcgtatctgttaatgtgcatctgggatacaaccaagaggactcgattgtgatgaatcgt
tcttccctggagcgtggaatgtttcgatctgaacatattagaagctataaggcagaggtt
gagagctacgagggattagggaaaaagcttaagcctgaagactgtataagctttgggaaa
acacagagcaaaattggacgggtagacagccttgatgatgatggccttcccttcattggt
gccaacctccaaacaggcgacatagtcataggaaaacattctgaatcgggggttgatcac
agcattaagctgcggcacactgaaagagggatggttcataaagtcgtgctttctgctaat
gatgatggaaagaacttcgctgttgtatctctagcacaggttcgttctccgtgtcttggt
gacaagttctcgagtatgcatggacagaagggtgttcttgggtttctggagtcgcaagaa
aacttcccttttacgaaacaaggaatagtcccagacattgtgataaatcctcacgcattt
ccatcccgacaaactcctggtcaactgttagaagccgccttgggcaaagggattgcccta
gggggtgcactaaaatgcgccaccccattttcaactccatcggtcgaagatattacagct
caacttcataggcttggattttcaagatgggggcatgaaaaagtttatgatggtcggact
ggagaagcagttcgttccctgatttttattgggccaactttctaccagcgcctcactcac
atggccgaggataaagtgaaatttaggaatacagggcccgtccatccactcacccgccag
ccagttgcggataggaagcgatttggcgggatcaaattcggagagatggaacgtgactgt
ctattagcccatggtgcagctgcaaatttacacgagcgcctcttcaccctgagtgattcc
tctcagatccacatatgccgcagctgtaagaacgtggccaacgtaattcagcgcccggtg
tttggtggccataagattcgtggtccttattgtcggttctgtgagtcggtggaagatgta
gtgagggtcaacgtcccatacggagcaaagctcctctgtcaggagctgttcagtatggga
atctctctcaagtttgataccgagttgtgctga

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