Henckelia pumila: 140863012
Help
Entry
140863012 CDS
T11037
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03020
RNA polymerase
hpum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140863012
09124 Replication and repair
03420 Nucleotide excision repair
140863012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140863012
03400 DNA repair and recombination proteins [BR:
hpum03400
]
140863012
Enzymes [BR:
hpum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140863012
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
140863012
DNA repair and recombination proteins [BR:
hpum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
140863012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
140863012
NCBI-ProteinID:
XP_073122193
LinkDB
All DBs
Position
4:1145849..1152744
Genome browser
AA seq
1194 aa
AA seq
DB search
MDLEEEYYEPAYNEEEEDDDDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQPDFAETIYKICFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRP
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFS
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDMLVSTLRRLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIRKKDIQALQQRESPDEGGWN
DLVAKGFIEYIDTEEEETTMISMTISDLVSARLNPSEAYSDTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAISCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISSEDAQGQAARYTKRDH
STSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKN
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKDVKKKGA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacttggaggaagagtactacgaaccggcttacaacgaagaagaggaagacgatgat
gatgacattacgcaggaggacgcctgggctgtcatcagtgcttattttgaggagaagggt
ttggtgcgccagcaactcgactctttcgacgagtttatccagaacactatgcaagaaatc
gttgatgagtcggcggacatcgagatcagacccgagtcgcagcacaacccgggtcaccag
ccagacttcgctgagactatttataagatatgttttggccaaatatacctgagtaaacca
atgatgacagagtctgatggagaaacagcaactttgtttcctaaggctgcaaggttaagg
aatttgacctattcagctccattgtacgtggatgttagcaagagagttatcaagaaaggt
catgatggtgaggaagttaccgagactcaggatttcaccaaagttttcattgggaaggtt
cctattatgctacggtcgagttattgtacactatatcagaattcagagaaagatttgaca
gaactgggagagtgtccatatgaccagggtggttattttatcataaatggaagtgaaaag
gtgttaattgctcaggagaagatgagcaccaaccatgtctatgtatttaaaaagaggcaa
ccaaacaagtatgcttatgttgccgaagtccgatccatggcagagacccaaaacaggcca
cctagtacaatgtttgtccggatgctttctcgtactagtgccaaagggggttcatctggt
cagtatatacgtgctaccctcccatacatacgcacagagattcctatcattattgtgttc
cgagcactaggatttgtcgctgacaaagatatattagagcacatctgctacaatttttcg
gacacacaaatgatggaattgctgcgaccctccttggaagaagcatttgtgatccaaaat
caacaggttgctctagattacattgggaaaagaggagccactgtaggtgtcaccaaggag
aaaagaattaagtatgccaaggagattcttcagaaagaaatgcttcctcatgttggtgtt
ggggagtattgtgagacgaagaaagcttattattttgggtatatcatccaccggcttctg
ctgtgtgctcttggccgaagggccgaggatgatagagaccactatggcaataagagactg
gatcttgctggtcctttgcttggtggcctgtttcgaatgttattcagaaagttgaccagg
gatgttagatcttatgttcagaagtgtgtcgataatgggaaagacgtcaatttgcaattt
gcaataaaagcaaaaaccattaccagtggcctgaaatactctcttgccactggcaactgg
ggacaagcaaatgcggcaggtacaagagctggagtttcccaggtgttaaatcgtctgact
tatgcttctaccttgtcacatctacgtaggctcaattctcccattggtcgtgaagggaaa
ctggctaagccaaggcagttgcacaattcgcaatggggaatgatgtgtccagcagaaaca
ccagaaggacaagcttgtggattggtgaagaacctcgcattgatggtctatataacagtt
ggttcagcagcgtatccaattttagaatttttagaggaatggggtactgagaactttgag
gaaatctctcctgctgttattcctcagtcaacaaaaatctttgtgaatggttgttgggtt
ggcattcatcgtaaccctgatatgttggtgtcaactctaagacgtttgaggagacgtgtt
gatgttaataccgaggttggtgtagttcgagatatccgtttgaaagaacttcggatatat
acagattatggtcgctgcagtcgtccattgtttattgttgaaaaacaaagattgcttatc
agaaagaaggatatacaagccttgcaacaaagagaatctcccgatgagggtggctggaat
gaccttgttgcaaaaggattcatagaatacattgataccgaagaagaagaaacaactatg
atttccatgacaattagtgatcttgtgtctgcgaggctaaatccaagtgaggcgtattct
gatacctatactcactgcgagattcatccatctctgatactgggtgtgtgtgcttcaatc
atcccctttccagatcataaccagtctccacgtaacacataccagtcagctatgggtaaa
caagccatgggtatttatgtcaccaacttccaatttcggatggacactttggcttatgtg
ctttactatccccaaaagcctcttgtcaccactcgagctatggagcatttgcattttagg
cagttacctgctggcattaatgccattgttgccatttcctgctattctggatacaaccaa
gaagattctgtcattatgaatcagtcatcagtcgaccggggcttttttcgatccctattt
ttccgttcttatagggatgaagagaaaaagatgggaacactggtcaaagaggattttgga
cgtccagatagagccaacaccatgggcatgcgtcatggttcttatgataaattggatgat
gatggacttgctcctccaggaactagagtttctggtgaggatgttattattgggaagaca
acccccatatcttccgaagatgctcaagggcaagctgctcgttacacaaaacgtgatcac
agcacaagcttacgccacagtgaaactgggattgtggatcaggtcctactgaccacaaat
gcagatgggttaagatttgtcaaagtgagggtgagatccgtacgaataccccaaattgga
gacaagttcagcagtaggcatggccaaaagggaacagtgggtatgacttacacacaagaa
gacatgccatggactgtagaaggcatcactcccgatattattgtcaatccacatgctatt
ccctctcgtatgacgattggtcagcttattgaatgcatcatgggaaaagttgcagctcac
atgggaaaggaaggtgacgccactccatttacagatgtcacagtggacaacataagcaaa
gctcttcataaatgtggttaccagatgcgtgggtttgagaccatgtacaatgggcatact
ggaagaagacttacatctatgatatttttagggcccacttactaccagaggctgaagcac
atggtcgatgacaaaatacactctcgtggtagaggccctgttcaaatccttacaaggcaa
cctgctgaaggacgatctcgtgatggtggtctccgatttggtgaaatggaacgagattgc
atgattgctcatggcgctgcccactttttgaaggaaaggttgtttgaccaaagtgacgcc
tacaggatccatgtttgcgagcgatgtggattgatagccattgcaaatctcaaaaagaat
tcatttgagtgcagaggatgcaaaaacaaaactgatatagttcaggttcatattccatat
gcctgtaagctgcttttccaggagctaatggctatggctatagctccaagaatgctgaca
aaggatatcaagcaagcgaaagatgtaaagaagaaaggagcttga
DBGET
integrated database retrieval system
