Henckelia pumila: 140863268
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Entry
140863268 CDS
T11037
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hpum Henckelia pumila
Pathway
hpum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140863268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140863268
03036 Chromosome and associated proteins [BR:
hpum03036
]
140863268
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
140863268
Coactivators
SAGA/TFTC/STAGA complex
140863268
Chromosome and associated proteins [BR:
hpum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
140863268
STAGA complex
140863268
TFTC complex
140863268
SAGA complex
140863268
SLIK complex
140863268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
DSE1_N
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_IFT140_1st
ASA1
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR41
CFAP251_N
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
PAC11
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Cytochrom_D1
Beta-prop_Nup120_160
PALB2_WD40
Beta-prop_ACSF4
PROPPIN
Motif
Other DBs
NCBI-GeneID:
140863268
NCBI-ProteinID:
XP_073122677
LinkDB
All DBs
Position
4:complement(150454354..150461752)
Genome browser
AA seq
671 aa
AA seq
DB search
MDQEEIDKVVLAYLDRRGFKQAGLAFQQEKQQNSKGSDISSTALIDPEIAKQILAFSEVD
GPAQYQEGYSKLRSWAYSSLDQYQHELVRVLFPVFIHGFMDLVGKGHISEARVFFNSFRG
DHEIIHARDLQKLEGVLSPSHLEEMEFARALRQSKVNMKICQYSYDLLLQYLHKSQSITM
LGIINEHINFQVSPGQPSSIADDTEFVALYGSGQDAADLINQKEIHWGLLEDSLEEKLEK
NGVSNADSEKADGELREGELEENKKKSVDGGKQASTLKKLKKDKAGSATTKARSESTAVS
GAPHVKPELALPVIPPEVEHSILDDLRNRVQLSGGALPSVSFYTFINTHDGLNCASISND
GSLVAGGFSDSSLKVWDMAKLGQPNEFSSLQGENELAPNGQIRSNNAGERPYTLFRGHCG
PVHSATFSPFGDFLLSSSSDSTIRLWSMNFNANLVCYKGHNYPVWDVQFSPVGHYFASAS
HDRTARIWSVERIQPLRIMAGHLSDVDCVRWHSNCNYIATGSSDKTVRLWDVQSGECVRV
FVGHRSMILSLAMSSDGRYMASGDEDGTIMMWDLASGRCISPLVGHNSCVWSLSFSCEGS
LLASGSADCTVKIWDVAASSKVAKNEENSKSGSANRLRSLKTLPTKSTPVYALQFSRRNL
LFAAGALSKQS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaagaaatagataaagtggttctggcttatttagacagaaggggctttaag
caagctggcctcgcttttcaacaagagaagcagcaaaatagcaaaggcagcgacatctcc
tcaactgcactaatcgatcccgagattgccaagcaaatccttgcattctctgaggtggat
ggtcctgcacagtaccaagaaggttacagcaaacttcgatcgtgggcgtatagttcattg
gatcaataccagcacgagttggttcgcgtgttgtttccagtatttattcatggatttatg
gatcttgtgggtaaaggtcacatttcagaagccagagttttttttaatagctttcgagga
gaccatgagattatccatgcgcgtgacctccaaaaattagagggtgttctttctccatca
catctggaggaaatggaatttgcacgtgccctaagacagagcaaagtcaacatgaagata
tgtcaatactcatatgatctacttctgcaatatttacacaagtctcaatcaattactatg
cttggaatcatcaatgagcacatcaacttccaagtttctcccggacaaccaagctcgatt
gctgatgatactgaatttgttgcactttatggaagtggccaggatgcagctgatttgata
aatcagaaagaaatccattgggggttgcttgaagattctttggaagaaaagttggagaag
aatggtgtttccaatgcggattcggaaaaggcagatggagaactgagggaaggggaactg
gaagagaataagaaaaaatctgttgatgggggaaaacaagcctcgacacttaaaaagctg
aaaaaagacaaggctggcagtgcaacaacaaaggctcgttcagagagtactgctgtatct
ggagctccacatgtcaaaccagagctagccttgccagtaataccaccagaggtggaacat
tctattcttgatgacttaaggaaccgtgtgcagttgagtggtggggcattgccttccgtc
agcttttatacgtttatcaacacacatgatggtttaaattgtgcttcgatatctaatgat
gggtcgttggtagctggtggattctcagactcatcgttaaaggtttgggacatggcaaag
cttgggcaaccaaatgagttttcttctttgcagggtgaaaatgagttagctcccaatggg
cagatacgtagcaataatgccggggaaagaccatataccttatttcgaggacattgtgga
cccgttcattccgccacatttagtccatttggagattttcttctatcgtcgtcatcagat
tcaacgattcgattgtggagcatgaattttaatgcaaatcttgtttgctacaaaggtcac
aattatcctgtgtgggatgttcagtttagtccagtaggacactattttgctagtgcttca
catgatcggacggcaaggatctggtccgtggagagaatacagcctttacgaataatggca
ggtcatttatctgatgtagattgtgtgcgatggcattcaaattgcaactatatagcaact
ggatctagtgacaaaacagtgcgattgtgggacgtccagagtggagaatgtgttagagtt
ttcgttggtcaccggagtatgattttatctttagcaatgtcatctgacggtcgttacatg
gcatctggtgatgaagatggcacaataatgatgtgggatcttgccagtggtcgctgcatt
tcccctttagttggtcacaactcttgcgtatggtcactttctttcagctgcgaaggttca
cttttggcatctggttctgccgattgcactgtgaaaatatgggacgtagctgccagctct
aaagtggcaaaaaatgaagaaaacagcaaaagtggaagcgccaacaggctaagatcactg
aagacattgcctaccaaatctactcctgtctatgctttgcagttctctcgaaggaatctt
ttatttgctgccggggctctctcaaagcagtcgtaa
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