Henckelia pumila: 140863268
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Entry
140863268 CDS
T11037
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hpum Henckelia pumila
Pathway
hpum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140863268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140863268
03036 Chromosome and associated proteins [BR:
hpum03036
]
140863268
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
140863268
Coactivators
SAGA/TFTC/STAGA complex
140863268
Chromosome and associated proteins [BR:
hpum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
140863268
STAGA complex
140863268
TFTC complex
140863268
SAGA complex
140863268
SLIK complex
140863268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF12
WD40_like
Cytochrom_D1
Beta-prop_Nup120_160
PALB2_WD40
Beta-prop_VPS8
PROPPIN
Motif
Other DBs
NCBI-GeneID:
140863268
NCBI-ProteinID:
XP_073122677
LinkDB
All DBs
Position
4:complement(150454354..150461752)
Genome browser
AA seq
671 aa
AA seq
DB search
MDQEEIDKVVLAYLDRRGFKQAGLAFQQEKQQNSKGSDISSTALIDPEIAKQILAFSEVD
GPAQYQEGYSKLRSWAYSSLDQYQHELVRVLFPVFIHGFMDLVGKGHISEARVFFNSFRG
DHEIIHARDLQKLEGVLSPSHLEEMEFARALRQSKVNMKICQYSYDLLLQYLHKSQSITM
LGIINEHINFQVSPGQPSSIADDTEFVALYGSGQDAADLINQKEIHWGLLEDSLEEKLEK
NGVSNADSEKADGELREGELEENKKKSVDGGKQASTLKKLKKDKAGSATTKARSESTAVS
GAPHVKPELALPVIPPEVEHSILDDLRNRVQLSGGALPSVSFYTFINTHDGLNCASISND
GSLVAGGFSDSSLKVWDMAKLGQPNEFSSLQGENELAPNGQIRSNNAGERPYTLFRGHCG
PVHSATFSPFGDFLLSSSSDSTIRLWSMNFNANLVCYKGHNYPVWDVQFSPVGHYFASAS
HDRTARIWSVERIQPLRIMAGHLSDVDCVRWHSNCNYIATGSSDKTVRLWDVQSGECVRV
FVGHRSMILSLAMSSDGRYMASGDEDGTIMMWDLASGRCISPLVGHNSCVWSLSFSCEGS
LLASGSADCTVKIWDVAASSKVAKNEENSKSGSANRLRSLKTLPTKSTPVYALQFSRRNL
LFAAGALSKQS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaagaaatagataaagtggttctggcttatttagacagaaggggctttaag
caagctggcctcgcttttcaacaagagaagcagcaaaatagcaaaggcagcgacatctcc
tcaactgcactaatcgatcccgagattgccaagcaaatccttgcattctctgaggtggat
ggtcctgcacagtaccaagaaggttacagcaaacttcgatcgtgggcgtatagttcattg
gatcaataccagcacgagttggttcgcgtgttgtttccagtatttattcatggatttatg
gatcttgtgggtaaaggtcacatttcagaagccagagttttttttaatagctttcgagga
gaccatgagattatccatgcgcgtgacctccaaaaattagagggtgttctttctccatca
catctggaggaaatggaatttgcacgtgccctaagacagagcaaagtcaacatgaagata
tgtcaatactcatatgatctacttctgcaatatttacacaagtctcaatcaattactatg
cttggaatcatcaatgagcacatcaacttccaagtttctcccggacaaccaagctcgatt
gctgatgatactgaatttgttgcactttatggaagtggccaggatgcagctgatttgata
aatcagaaagaaatccattgggggttgcttgaagattctttggaagaaaagttggagaag
aatggtgtttccaatgcggattcggaaaaggcagatggagaactgagggaaggggaactg
gaagagaataagaaaaaatctgttgatgggggaaaacaagcctcgacacttaaaaagctg
aaaaaagacaaggctggcagtgcaacaacaaaggctcgttcagagagtactgctgtatct
ggagctccacatgtcaaaccagagctagccttgccagtaataccaccagaggtggaacat
tctattcttgatgacttaaggaaccgtgtgcagttgagtggtggggcattgccttccgtc
agcttttatacgtttatcaacacacatgatggtttaaattgtgcttcgatatctaatgat
gggtcgttggtagctggtggattctcagactcatcgttaaaggtttgggacatggcaaag
cttgggcaaccaaatgagttttcttctttgcagggtgaaaatgagttagctcccaatggg
cagatacgtagcaataatgccggggaaagaccatataccttatttcgaggacattgtgga
cccgttcattccgccacatttagtccatttggagattttcttctatcgtcgtcatcagat
tcaacgattcgattgtggagcatgaattttaatgcaaatcttgtttgctacaaaggtcac
aattatcctgtgtgggatgttcagtttagtccagtaggacactattttgctagtgcttca
catgatcggacggcaaggatctggtccgtggagagaatacagcctttacgaataatggca
ggtcatttatctgatgtagattgtgtgcgatggcattcaaattgcaactatatagcaact
ggatctagtgacaaaacagtgcgattgtgggacgtccagagtggagaatgtgttagagtt
ttcgttggtcaccggagtatgattttatctttagcaatgtcatctgacggtcgttacatg
gcatctggtgatgaagatggcacaataatgatgtgggatcttgccagtggtcgctgcatt
tcccctttagttggtcacaactcttgcgtatggtcactttctttcagctgcgaaggttca
cttttggcatctggttctgccgattgcactgtgaaaatatgggacgtagctgccagctct
aaagtggcaaaaaatgaagaaaacagcaaaagtggaagcgccaacaggctaagatcactg
aagacattgcctaccaaatctactcctgtctatgctttgcagttctctcgaaggaatctt
ttatttgctgccggggctctctcaaagcagtcgtaa
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