Henckelia pumila: 140863487
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Entry
140863487 CDS
T11037
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
hpum Henckelia pumila
Pathway
hpum04120
Ubiquitin mediated proteolysis
hpum04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140863487
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
140863487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hpum04121
]
140863487
Enzymes [BR:
hpum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140863487
Ubiquitin system [BR:
hpum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140863487
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
140863487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_DCAF4
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
zf-C3HC4
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WD40_RFWD3
WD40_like
Beta-prop_WDR35_TULP_N
zf-C3HC4_3
zf-RING_2
Beta-prop_SCAP
Beta-prop_WDR75_1st
eIF2A
zf-RING_UBOX
U-box
zf-C3HC4_4
Beta-prop_DCAF12
zf-RING_5
zf-Nse
DUF1664
zf-RING_6
zf-RING_10
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
140863487
NCBI-ProteinID:
XP_073123049
LinkDB
All DBs
Position
4:115143532..115168058
Genome browser
AA seq
661 aa
AA seq
DB search
MGDSLMETAEMAVDKAETPPCAQAVAAAASEKELLCPICMQIIKDAFLTACGHSFCYMCI
VTHLQNKSDCPCCAHFLTTSHLFPNFLLDKLLKKKFVHQWSKSATPFEQFRQSLEQGCEV
TIKELDALLVLVSEKKRVMEQEEAERNMQFLLDFLHCLRKQKVSELNEVQHDLQYIKEDI
NAVERHRIELYRARDRYSGNLQMISYEPMGTRSQSSLVDRNTSGIVINSCDAKGVITSVN
FKNKKEEKKAQVNPLGTQSKDASFSGPTSQHISQSGLAVLRKKRVHAQFNDLQDFYLQTR
RQSSNQLLNQVKKDKSKFNREGYSVGLVDFQSVLNTFTRYSRLRVIAELRHEDLFHHANI
VSSIEFDRDDELFATAGVSRRIKVFDFSSVVNETKDVHPVVEMSTRSKLSCLTWNKFVKN
HIASSDYEGIVTVWDVVTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTN
QEASVLNIDMKANICCVKYSPESSKFVAVGSADHHIHYYDLRNTCHPLHIFGGHKKTVSH
VKFLSNSELASASTDNTLRLWDVKNNVHVRAFRGHTNEKNFVGLTGNNEFLACGSETNEV
FVYHKAISRPATWHRFGSPDLDDNDEDAGSYFISAVCWKSESPTMLAANSKGTIKVLVLA
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtttaatggaaacggcggagatggcggtggacaaggcggagacgcctcca
tgcgcacaagctgtggcggcggctgcgtctgagaaagagctgctgtgcccaatatgtatg
cagatcataaaggacgccttcttaacagcgtgtggacacagcttctgctatatgtgcatt
gtcactcatctgcagaacaaaagcgactgtccctgctgcgctcattttctaacgacttct
catctcttccccaattttctactggataagctattgaagaaaaaatttgttcaccagtgg
tcgaaaagcgcaacacccttcgaacaatttcgtcagtcactggaacagggttgtgaagta
acgataaaggagttagacgctcttttggttctggtgtcagagaaaaagagagtaatggaa
caggaagaagctgagagaaacatgcaatttcttcttgatttcttacactgtttaagaaag
caaaaagtttctgaactgaacgaggtgcaacacgatctccagtatatcaaagaggacata
aatgctgtggaaaggcacagaatagagctttacagagcaagagaccggtattcgggtaat
ctgcagatgatttcttatgaacccatgggaacaagatctcagtcttctttagttgatcga
aacacttccggcattgttattaactcttgtgatgcaaaaggagtaataacttctgttaac
ttcaaaaacaagaaagaggagaaaaaggctcaagttaacccccttggaacccagagcaag
gacgcatcttttagtgggccaacttcacagcatataagtcagtctggcttggccgtactt
aggaaaaaacgcgtccatgcacagtttaatgatcttcaagacttttatttacaaacacga
cgccagtcaagcaaccaattgctgaaccaagtaaagaaagacaaaagtaaattcaataga
gaaggctatagtgttggtttagttgattttcagtcagttctaaatactttcacacggtac
agtcgattgcgagtaattgccgagcttaggcatgaagatctgtttcatcatgccaatatt
gtttcaagtatagaatttgatcgtgatgacgaactctttgccactgctggagtgtcacga
cgcattaaagtctttgatttctcatcagtcgtcaatgaaacaaaagacgtgcatccagtt
gtggaaatgtcgacacgatccaagcttagctgcttgacctggaataagtttgtcaaaaac
catatagccagcagtgattatgaaggaatagtcactgtttgggatgttgttacacgacag
agtgttatggaatatgaggagcatgaaaaacgtgcatggagtgtagatttttcccgaact
gaaccgtcgatgctcgtctctggtagtgatgactgcaaggtcaaggtgtggtgcacaaat
caagaggctagtgttctcaacattgatatgaaggcaaatatatgctgtgtaaagtatagt
ccggagtccagtaaatttgttgcggttggttctgcagaccatcacatccattattatgac
ttaagaaacacctgccatcccctccatatttttggcggccataaaaagacagtgtcgcat
gttaaatttttatccaatagcgagcttgcttctgcatcaacagacaatactttgcgatta
tgggatgttaagaacaatgtgcatgtccgcgccttccgagggcacacaaatgaaaagaat
tttgttggtcttacagggaacaatgagttcctagcttgtggcagtgaaacgaatgaagtg
tttgtctaccacaaggctatctccagacctgcaacatggcatagatttgggtctccagat
ttggatgataatgacgaagatgcaggatcttatttcatcagtgcagtgtgctggaagagt
gaaagccccaccatgttagctgccaatagtaaaggaacaatcaaggtgctggtccttgct
gcttga
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