KEGG   Henckelia pumila: 140863487
Entry
140863487         CDS       T11037                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
hpum  Henckelia pumila
Pathway
hpum04120  Ubiquitin mediated proteolysis
hpum04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:hpum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    140863487
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    140863487
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hpum04121]
    140863487
Enzymes [BR:hpum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     140863487
Ubiquitin system [BR:hpum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    140863487
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     140863487
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd DSE1_N EIF3I Beta-prop_TEP1_C Beta-prop_EML zf-C3HC4 WD40_MABP1-WDR62_1st ASA1 Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_NOL10_N Beta-prop_Aladin WD40_RFWD3 Beta-prop_WDR35_TULP_N zf-RING_2 zf-C3HC4_3 Beta-prop_WDR41 WD40_like Beta-prop_SCAP PAC11 eIF2A Beta-prop_WDR75_1st zf-RING_UBOX U-box zf-C3HC4_4 Beta-prop_DCAF12 zf-RING_5 Beta-prop_RSE1_2nd zf-Nse DUF1664 zf-RING_6 zf-RING_10 zf-rbx1
Other DBs
NCBI-GeneID: 140863487
NCBI-ProteinID: XP_073123049
LinkDB
Position
4:115143532..115168058
AA seq 661 aa
MGDSLMETAEMAVDKAETPPCAQAVAAAASEKELLCPICMQIIKDAFLTACGHSFCYMCI
VTHLQNKSDCPCCAHFLTTSHLFPNFLLDKLLKKKFVHQWSKSATPFEQFRQSLEQGCEV
TIKELDALLVLVSEKKRVMEQEEAERNMQFLLDFLHCLRKQKVSELNEVQHDLQYIKEDI
NAVERHRIELYRARDRYSGNLQMISYEPMGTRSQSSLVDRNTSGIVINSCDAKGVITSVN
FKNKKEEKKAQVNPLGTQSKDASFSGPTSQHISQSGLAVLRKKRVHAQFNDLQDFYLQTR
RQSSNQLLNQVKKDKSKFNREGYSVGLVDFQSVLNTFTRYSRLRVIAELRHEDLFHHANI
VSSIEFDRDDELFATAGVSRRIKVFDFSSVVNETKDVHPVVEMSTRSKLSCLTWNKFVKN
HIASSDYEGIVTVWDVVTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTN
QEASVLNIDMKANICCVKYSPESSKFVAVGSADHHIHYYDLRNTCHPLHIFGGHKKTVSH
VKFLSNSELASASTDNTLRLWDVKNNVHVRAFRGHTNEKNFVGLTGNNEFLACGSETNEV
FVYHKAISRPATWHRFGSPDLDDNDEDAGSYFISAVCWKSESPTMLAANSKGTIKVLVLA
A
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgggagatagtttaatggaaacggcggagatggcggtggacaaggcggagacgcctcca
tgcgcacaagctgtggcggcggctgcgtctgagaaagagctgctgtgcccaatatgtatg
cagatcataaaggacgccttcttaacagcgtgtggacacagcttctgctatatgtgcatt
gtcactcatctgcagaacaaaagcgactgtccctgctgcgctcattttctaacgacttct
catctcttccccaattttctactggataagctattgaagaaaaaatttgttcaccagtgg
tcgaaaagcgcaacacccttcgaacaatttcgtcagtcactggaacagggttgtgaagta
acgataaaggagttagacgctcttttggttctggtgtcagagaaaaagagagtaatggaa
caggaagaagctgagagaaacatgcaatttcttcttgatttcttacactgtttaagaaag
caaaaagtttctgaactgaacgaggtgcaacacgatctccagtatatcaaagaggacata
aatgctgtggaaaggcacagaatagagctttacagagcaagagaccggtattcgggtaat
ctgcagatgatttcttatgaacccatgggaacaagatctcagtcttctttagttgatcga
aacacttccggcattgttattaactcttgtgatgcaaaaggagtaataacttctgttaac
ttcaaaaacaagaaagaggagaaaaaggctcaagttaacccccttggaacccagagcaag
gacgcatcttttagtgggccaacttcacagcatataagtcagtctggcttggccgtactt
aggaaaaaacgcgtccatgcacagtttaatgatcttcaagacttttatttacaaacacga
cgccagtcaagcaaccaattgctgaaccaagtaaagaaagacaaaagtaaattcaataga
gaaggctatagtgttggtttagttgattttcagtcagttctaaatactttcacacggtac
agtcgattgcgagtaattgccgagcttaggcatgaagatctgtttcatcatgccaatatt
gtttcaagtatagaatttgatcgtgatgacgaactctttgccactgctggagtgtcacga
cgcattaaagtctttgatttctcatcagtcgtcaatgaaacaaaagacgtgcatccagtt
gtggaaatgtcgacacgatccaagcttagctgcttgacctggaataagtttgtcaaaaac
catatagccagcagtgattatgaaggaatagtcactgtttgggatgttgttacacgacag
agtgttatggaatatgaggagcatgaaaaacgtgcatggagtgtagatttttcccgaact
gaaccgtcgatgctcgtctctggtagtgatgactgcaaggtcaaggtgtggtgcacaaat
caagaggctagtgttctcaacattgatatgaaggcaaatatatgctgtgtaaagtatagt
ccggagtccagtaaatttgttgcggttggttctgcagaccatcacatccattattatgac
ttaagaaacacctgccatcccctccatatttttggcggccataaaaagacagtgtcgcat
gttaaatttttatccaatagcgagcttgcttctgcatcaacagacaatactttgcgatta
tgggatgttaagaacaatgtgcatgtccgcgccttccgagggcacacaaatgaaaagaat
tttgttggtcttacagggaacaatgagttcctagcttgtggcagtgaaacgaatgaagtg
tttgtctaccacaaggctatctccagacctgcaacatggcatagatttgggtctccagat
ttggatgataatgacgaagatgcaggatcttatttcatcagtgcagtgtgctggaagagt
gaaagccccaccatgttagctgccaatagtaaaggaacaatcaaggtgctggtccttgct
gcttga

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