Henckelia pumila: 140864335
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Entry
140864335 CDS
T11037
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
hpum Henckelia pumila
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hpum03009
]
140864335
Ribosome biogenesis [BR:
hpum03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
140864335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
HEAT_GCN1
TPR_Trm732_C
UTP20_C
HEAT_GCN1_C_2
RYDR_ITPR
DnaB_bind
Motif
Other DBs
NCBI-GeneID:
140864335
NCBI-ProteinID:
XP_073124563
LinkDB
All DBs
Position
4:152880838..152905662
Genome browser
AA seq
2687 aa
AA seq
DB search
MATPSHASAVKSLNNSSGRRRFVFKTFWQRIEEIDIDVYRSLEPLKEEPSAGSSFFLDCL
VEYRELNTAEDFISFYEEMLPLVQTLPQIILHKELIITSLLSRLQLKGRLSLEPVLRLIV
ALSRDLLEDFIPFLQRIANSIESLLESGADKDPEIIEQIFRSWSCIMMYLQKYLADNAGH
VLRITAKLRYYPKDYVRELMAESVSFLLRKTPIPMLKTDICKVMAEIIEEPSETRKSGVG
ALLSHAMRITSSRLHSRAKILLPLLVDDLFIQIGNPKDKGLSIAVEVLCLAFQRLCAELD
PPELIIVWEFLVSKITDCATESSPYLSCLLSILISMVQSDNVGKISDYSSILRLVNLLLH
KVVMPFHTTDTVEQKSDVLDQVLNLMLCVLNGLSKSKNISALSDVASQWEPIFKSRSRSL
LNFLDNLLNDPSTFHVFGTNILSSLNNLIQIFEEEAVYLMVIFCDKVGEESSNLLHRNSM
ENLSRIHGFLEETLKYWIGNINEAVKGNSISISVQQSRLAVLWGVIGCYSYFADAQASSS
ILMDLIDSVDELLMGEHNFTVIQEATWQTLIGAALGAYHKFACSRNIAHDKASLTRFLDL
AKRYKSSPQILAVVADTFDSVLGSENRDDGKSEFYLPECISGNGLDTLNLFAENLCHADK
KVRLSTLRILCHFEPFHDDLSAKEFPVKKRRRDDSVACHAKDPHIDVLNLLRSIEKTPLS
VATSRQVILLLSKIQLGLSARSVPEQYLPAILSGIVGIFYNRFSYVWNPASECLAVLIGQ
YFRTLWDKYVKHLDHCQSAFLTSRDLCGQGDDCNKDDSLVGRFRSNISPLFDSTPPATVL
SLLIQSLHKVPSAVDSESRLIVNLFLKFLGYNIDELTRVEYYVLDLKGKEWKSVLREWLS
LFGLLRNPKALYQSIFLKDVLQYRLLEENDADIQMKVLDCLLTWKDDFLLPYSQNLKNLI
NAKDLREELTRWSLSSQSIGGINVLHRTYTVPIVIRILIPKVRSLKMLACQKSGVSHRRA
VLGFLAQLDVDELPLFFWLLIKPLLSMHQGEHEMSKSFWSLSGSPRDEFYISNVMKHFTT
DSISSLSWKKKFGFLHVVEEILKVFDVPHLNRFLDLLAYCVVQILAGCTSTLGPSKSSGS
FSVHNSCSFDADTAENNEVEGRIMARAAVKHLKDLRSLCLKIVHKFLSKYEDHDFESSFW
DLFMTSVKPLIANFAQEGASSKEPSSLFYCFLAMSKSNKLVPLLQKNGNLVPDIISMLTL
PSASEEILSCVFEFTMNLLELDSELNSEENIVKKILLPHLDLLIQSLRSFFTNENITKRK
LVQFLGKREFTVFSLISKYVKEPSVAETFLDILLPLLTMRQQDFDTCIQVLQIVQQVVKV
LESGTSKKILPSITSLLMTAGLVVRTAICDVLDAIAVKDSSVLTLARILRELNASSEMEI
GGLDYDKVICAYDKITVEFFYTIQEEHALVILAHSIQDMSSEELILRQSAFRLLLNFIEF
CGKILNGSLNSDEVWSVAGIQHLANKFILKHMGNAMGKEGPAQKVWIDLLREMVLKLPKV
ASLDSYRALCSDDAEQDFFNNIVHLQKHRRAKALSRFRNIFTSEKLSEVITNKVLVPLFF
GMLLNLQDGKDEHVRHACLDALASVSSSMKWKQYYALLIRCFRYIQLKPDKKSPLLRLVS
SILDHFHFSDMPWAHESKVATCDILDPYAASMTSSSLRKCSRSTQLPVIQMSLHKNLFPK
IQKFLTSDSDKVNVTINLVALKLLKLLPVETMELQLPSIIHRIANFLKNRLESVRDEARS
ALAACLKELGLEYLQFIIQVLKGTLKRGYELHVLGYTLNFMLSKFLMNPICGKLDYCLED
LLSVIENDILGDVSEEKEVEKIASRMKETRKQKSYETLKLIAQSITFKTHALKLLSPFTI
HLHKQLTQKVKSKLENILSNIAAGIECNPSVDQTEFFVFTYGLIEDCIKDEGDEHENNKV
DKDNDGVRAYHSELLVNIDRRQSHLIAVFALGLLQNYMKNLKLDKEDEKLLSLLDPFISL
LGQCLSSKHANVTTTAVRCLSPLVRLPLPSLQCHADKIKNSLMVIVQGSVNASSPLSESC
IKLLTTLLRSTRVTLSARQLYMLTQFPLFVDLAKNPTFFALSLLKAIVHRKLVVPEIYDV
VQIVAELMVQSQQEHIRKKCGQIFLQFLRGYEVSKKRLLQHLDFLIDNLRYEHPSGREAV
LEMLHVIIKKVPEKVDEQSHTILFHLVCSLANDKDSKVRSMTAAAIKCLIGRVSPKSRDS
ILQFSKSWYLGREQNLCGAAAQVLGLLVEVMGGGFKENIGIVLPVTRSILQSALSALAHG
ELNMSDEPVAPFWKEAYYSLVLFEKILHQFHDLCFDSDLEDMWEIICQFLLHPHLWLRNI
SNRILSLYFTLIDAHAENHKVPMETFFLMKPSRLFLVAASFCSQLMAPLADDAACTIIWQ
NLVFSICHLHSILGKNACMDASRFWSSLENSAQDQFNKAFTVLDPLKGRRMLFSFTSDVC
VQHDQNEHPFISYLLQKLGKISFQMDATQMKIVFNLFKSISPELLGHYGKDSLIVYDGSA
SYAYQMLLPLYKVCEGYTGKVISDDLKQLAHEVRESIRVITGNHFIHVYNLVRKNLKGKR
DKRKQDEKIMAVVNPERNAKRKLRIAAKHRNNKRRKIMSLKMGRWMH
NT seq
8064 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaccttcacatgcatcggccgtaaaatctctcaacaattccagtggtcgccgc
cgatttgttttcaagactttttggcaaagaatagaagaaatcgatatagatgtttacaga
agtctagagccgttaaaagaggaaccatctgcaggttcatcgtttttccttgactgcctt
gtggagtaccgggaactaaacactgccgaagattttatttcattttatgaggaaatgttg
cccttggtacaaacgctaccacaaattatcttgcacaaggaactgataatcacaagtctt
ctttctagattgcaactgaaaggaaggctgtcgcttgaaccagtattacggttgattgtt
gctctatccagagatctgctggaggatttcataccctttctccaaagaattgctaattct
attgaatctcttcttgaaagcggtgctgataaggatccagagataatcgagcagatattc
agatcttggtcgtgtattatgatgtacttgcagaaatatcttgcggataatgctggccat
gttctgagaattactgcgaaattgagatactaccccaaagactatgttcgagagttaatg
gccgaatcagtatcatttttgttaaggaaaacaccaattccgatgctaaaaacagatatt
tgtaaagtcatggctgaaattatcgaggaaccatcagaaacacgaaaatctggtgttggt
gcattactgtctcatgctatgagaatcacctcatcgagattgcactcaagggctaaaata
ttattgccactgctggtggatgacttatttattcaaatcggtaatccgaaggacaaaggc
ttgagcattgctgttgaagttctttgtctggcctttcaaagattatgtgcggagttggat
ccaccggaattgattattgtgtgggaattcttagtcagtaaaataactgattgtgcaacg
gaaagctcgccttacctcagctgcctattgtccattcttatttctatggtgcaaagtgat
aatgttggaaaaatttctgattatagttctatacttcgactggttaatctgcttttacac
aaagttgtcatgccttttcataccacggataccgtcgagcagaagtccgatgtccttgat
caagttctgaatctaatgctctgtgtgcttaatggtctctccaaatctaaaaacatttca
gcgttgtctgatgttgcttcacaatgggaaccaatatttaaatcaaggagccgaagttta
ctgaattttctcgataatctcctcaatgacccttccacttttcatgtatttggaacaaat
attttaagctcattgaataatttgatacaaatattcgaggaagaagctgtttatttaatg
gtaattttctgtgataaagtcggggaggagagctctaacttgttgcacagaaactccatg
gaaaatctatcaagaatacacggttttcttgaagaaactctcaagtattggattggaaac
atcaacgaagctgtaaaagggaattcaatttccatttcagttcaacaaagcaggttggca
gttctgtggggtgttattggctgctacagttattttgcagatgcacaagcaagttcgtca
atattgatggatttgatagattcagtggatgaacttttgatgggtgaacataactttaca
gtcattcaggaagccacttggcaaaccctaattggtgctgcattgggtgcctatcataag
tttgcatgtagtaggaacattgctcatgacaaggcttcactgaccagattcttggatctt
gcgaaaagatacaagtcatcaccacaaattttagccgtagtagctgatacttttgattcg
gtcttggggtccgaaaatcgagacgatggaaaatccgaattttatcttccagaatgtata
tctggaaacgggttagacacattgaacctatttgctgaaaatctctgccatgctgataaa
aaggttcgcctttctaccctgcgaatattgtgccattttgaaccttttcacgatgacctt
tctgcgaaagagtttcctgtcaagaaaaggagaagagatgattctgtggcttgtcatgca
aaggatccacatattgatgttctcaaccttctcagatcaattgaaaagacacccctctca
gttgctaccagccgtcaagtcattttattgttatctaaaatacagttgggtctgagtgct
cggagtgttcctgagcaatatttgcctgccatattaagtggaattgttggaatattttat
aaccgatttagctatgtatggaatccagcatcagaatgtcttgccgtcctcattggccaa
tattttaggacgctgtgggacaaatatgttaagcatcttgatcattgccagtctgctttt
ttaacatctcgggatctatgtggtcaaggcgatgattgcaacaaagatgacagtttagtt
ggacggttcagatctaacatctctcccttgtttgatagtactccacctgctaccgttttg
tccctcttgattcaatctttacataaagttccgtctgctgtagattcagagagtaggcta
atagtaaacttgtttctgaagtttttgggctacaatattgatgagctcacaagggttgaa
tattatgtgctggatctgaaagggaaagaatggaagtcggttcttcgagagtggttaagc
ttgttcggactgctacgaaatccgaaagctttatatcaaagtatttttttaaaagatgtt
cttcaatataggcttcttgaagaaaatgatgctgacattcagatgaaagttcttgattgt
ctgctcacctggaaagatgatttcttacttccctacagtcagaatctgaaaaatctgatc
aatgcaaaagatctaagggaagagcttacaaggtggagcttatctagccaatcgattggt
ggcattaatgtgctgcacagaacttatacagtacctattgtcattagaatactaatacca
aaagttagaagcctgaaaatgcttgcttgccagaagagtggtgtaagtcatcgaagggct
gttcttggattcttagctcagcttgatgttgatgaacttcctcttttcttctggctgtta
atcaagcccctactttctatgcatcaaggtgaacatgaaatgagtaaaagtttctggagt
ttgtctggaagtcccagggatgagttttatatatcaaatgtcatgaagcatttcacaacg
gactctataagtagcctgtcttggaagaaaaaattcggttttctgcatgtagttgaagaa
atcttgaaagtttttgatgtgccacaccttaaccgttttctcgatctacttgcgtactgt
gttgtccagatattagccggctgcacatcaactctcggtccttcaaaaagtagtggatct
ttttctgtacataacagttgtagctttgatgcggacacagctgagaacaatgaagtggag
ggtagaatcatggcgagggcagctgtgaagcatttgaaggacttgagatccttgtgccta
aaaattgttcacaagtttcttagcaaatacgaggatcatgatttcgagagttccttttgg
gacctgttcatgacatcagttaaaccattaattgccaattttgcgcaagaaggcgccagt
agcaaggaaccgagttcactattttattgctttcttgctatgagtaaaagcaacaaactc
gtgcccctgctacagaagaatgggaatcttgtaccagatattatttccatgcttactctc
ccttcggcttctgaagaaattttgtcttgtgttttcgaatttactatgaacttattggag
cttgatagtgaactgaacagtgaagaaaatattgtcaagaaaatattgcttcctcacctt
gatcttcttatacaaagcttgcggagctttttcacaaatgaaaatattactaagaggaag
ttggtccagttcctgggcaagagggaatttactgtttttagtttgatatcaaaatatgta
aaggaaccgtcagttgctgaaacattcctggatatattgctccctcttctgacaatgaga
caacaggattttgatacttgtattcaagtattgcaaattgttcaacaagtggtaaaagtg
ctggagagtggaactagtaaaaaaattctaccttcaatcacctccctgcttatgacagct
gggctggttgtccggactgctatatgtgatgttcttgatgctattgctgtgaaagattct
tcagtgcttactctggcaagaattctccgtgaactgaatgcatcctctgaaatggagatc
ggtggtcttgattatgacaaagtaatctgtgcttatgataagattacggtggaatttttt
tacaccattcaagaggagcatgcattggtaatcttggcacactctatacaagacatgtcg
tctgaagaattgatcttaaggcaaagtgctttcagattattgctcaactttatcgaattt
tgtggcaagatccttaatgggtcgctaaattctgatgaagtatggtctgtagctggtatt
cagcacttagcaaacaagttcatcttgaagcacatggggaacgcaatgggcaaggagggt
cctgctcaaaaggtatggattgatttacttcgagaaatggtgttgaaacttcccaaggtt
gcaagccttgattcctatagggctttgtgcagtgatgatgcagaacaagatttcttcaac
aacatagttcacttacagaaacacaggagagctaaggctttgtctcgttttagaaacatt
ttcacatcagaaaagctttcagaggtgatcacaaataaagtgttggttccgctattcttt
ggcatgttgttaaatttgcaagatggaaaggatgagcatgtcagacatgcctgtttggat
gcgcttgcgtcagtttccagttccatgaagtggaagcaatattatgcgttgctaatcaga
tgcttccgatatatacagctaaaaccagacaagaaaagtcctttgttgcgtctggtcagc
tctatacttgatcacttccatttctcagatatgccttgggcccatgaatctaaagttgcc
acttgtgatattcttgatccatatgctgctagcatgacttcttcatcgttgagaaaatgt
tcacgctctacccaacttccagttatacagatgtccttgcacaagaatttattccccaag
attcaaaaatttttaacctctgactctgataaagtcaatgtgaccattaacctagttgca
ctaaaactcctaaaattgcttcctgtagaaaccatggagttgcaacttccaagtattatt
catcgcattgccaactttctgaaaaatcgtttggaaagtgtacgtgatgaagctagatct
gcattggctgcttgtttaaaggagctaggtttggaatacttacaatttattatccaagtc
ttgaaaggcacattgaagagaggatatgaattgcatgttcttggatatactctcaatttc
atgttgtccaaatttctcatgaatccaatttgcggaaagttggactattgtttagaagat
cttctttctgtcatagaaaatgatatacttggggatgtttctgaggagaaggaggttgaa
aagattgcttccagaatgaaagagacgagaaagcaaaagtcttatgagactctcaaattg
attgcccaaagtatcaccttcaaaactcatgcattgaagcttctttcaccttttacaatt
catcttcataagcagctcacccagaaagttaaatcaaagttggagaacatattaagcaat
atagctgctggtattgaatgcaatccatctgtggatcagactgaattttttgtatttaca
tatggcctcattgaagactgtatcaaggatgaaggtgatgaacatgaaaataataaagta
gacaaagataatgatggtgtccgagcatatcattctgaactattagtaaatattgatcga
cgccagtctcatttgatagcggtattcgcacttgggttgctgcagaattacatgaagaac
ctgaagcttgacaaagaggatgaaaaattactgtctctgttagatccttttatcagttta
ttgggccagtgtttgagctctaaacatgcaaatgtcacaactactgcagttaggtgcttg
tctccgctagtgaggttacctttgccatcccttcaatgtcatgcagacaaaataaagaat
tccttgatggtcattgtacaaggctccgtaaatgctagcagtccgctgtccgagtcatgt
attaagttgttgacaacacttctgcgaagcactagagttactttatcagctcgtcaatta
tatatgctgacccaatttcccttgtttgttgatcttgcaaagaatccgacattttttgcc
ctttcactgttgaaggctatcgtacaccgaaaactcgtagttcctgagatatatgatgtt
gtccagattgtcgcagaattgatggtacaaagccaacaggaacatattcgtaagaagtgt
ggtcagatttttcttcaatttttgcgtggatacgaagtttctaaaaagcgattgctacag
catcttgatttcttaattgataatctgaggtatgaacatcctagtggaagagaagctgtc
cttgagatgctccatgttatcataaaaaaagttcctgagaaagtagatgaacaatctcat
acaattttatttcatttggtttgttcattggccaatgataaagatagcaaagttcgttct
atgactgcggctgcgataaaatgtcttattgggcgtgtgagtccaaagtctcgtgactcc
attcttcagttcagcaagtcttggtaccttggtcgtgaacagaatctgtgtggtgcagca
gcgcaggttctgggtttgctagtggaagtaatgggaggaggtttcaaggaaaacatcggt
attgtacttcctgttacgagaagcattttgcagtctgcactcagtgctcttgcacatgga
gaacttaacatgtcagacgagccagttgctcccttttggaaggaggcgtattattcattg
gttttatttgagaagatccttcatcaattccatgacttgtgctttgatagtgatcttgag
gatatgtgggaaatcatctgtcagttcctgttgcatcctcatttgtggttacgcaacata
tcgaacaggattttgtctttgtacttcacattaattgatgcacatgcagaaaatcataaa
gtgccaatggaaacgttctttttgatgaaaccaagtagacttttcctggtagctgcatct
ttttgttcccaactgatggctccattggcagatgatgcagcttgcactattatctggcaa
aaccttgtgttttcaatttgtcatctgcactctattttgggaaagaatgcttgcatggat
gcttctaggttctggtccagccttgaaaattcggcccaggaccagtttaacaaagctttt
accgtgcttgatcctttaaaaggaaggaggatgcttttttcttttacttctgatgtctgc
gttcagcatgatcaaaatgagcatccatttatttcctatttgcttcagaaattgggaaaa
atatcatttcaaatggatgctactcagatgaaaattgtcttcaacttgttcaaatcaatt
tcgccagaacttcttggtcattatggcaaggattcacttattgtatatgacggttctgct
agttatgcctatcaaatgttgttgcctttgtacaaagtttgtgaagggtataccggaaaa
gttatttcagatgatctgaaacagttagcacacgaggttcgcgaaagcatcagagtaatc
acggggaaccatttcattcatgtttacaacctagtaaggaaaaatctcaaaggaaaaagg
gacaagaggaaacaagacgagaagatcatggctgtggtcaatccagaacgaaatgccaag
aggaaactcagaatcgcggccaagcatcggaacaataagagaaggaaaatcatgtccttg
aaaatgggaagatggatgcattaa
DBGET
integrated database retrieval system
