Henckelia pumila: 140864364
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Entry
140864364 CDS
T11037
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140864364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140864364
03012 Translation factors [BR:
hpum03012
]
140864364
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140864364
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140864364
Translation factors [BR:
hpum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140864364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
ATPase
AAA_19
nSTAND3
T2SSE
AAA_23
AAA_16
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
140864364
NCBI-ProteinID:
XP_073124606
LinkDB
All DBs
Position
4:14524364..14558060
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AA seq
1166 aa
AA seq
DB search
MRSRLGGFLAHTARKSSNHSHFSSTFQFSLNPDVIRLLYAGNRTCFCNFVENIRWFKLQK
FSSYPVIFRNGFCGYAAEQFSDDEYECDYESHPASSSVVNIDEWKWKLSMLLRNDEDQEI
VSRDKRDRRDFEQIARLAKHMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLS
LQRRVEGLLQEHLDRTLLNSEKADSTLSELNTKIHVENANTDENSDSFLDASVMEKVLQR
QSLRMRNMQRTWQESPEGKRMLDFRRSLPTFREKERLLQAIARNQVTVISGETGCGKTTQ
LPQYILESEVESGRGAFCNIICTQPRRISAMTVAERVSAERGEPLGETVGFKVRLEGKKS
KNTHLLFCTSGILLRRLLSDHNLGDITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL
ILMSATLNADLFSDYFGGAPMIHIPGFTYPVTAHYLEDILEMTGYKLNSFNQIDDYGQEK
MWKTQRQLAPRKRKNQITTLVEEALNKSNFENYSSAVVESLSCWAPDCVGFNFIEALLCH
ICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLICHGSMATSEQRLIFEKS
PSNVRKIVLATNMAEASITINDIVYVVDCGKAKETTYDALNNTPCLLPSWISQASARQRR
GRAGRVQPGVCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIIDFLSAALQ
PPEPLAVRNAVEFLKMIGALDETENLTHLGKFLSVLPVDPKLGKMLVMGSIFSCFDPVLT
IVAGLSVRDPFLLPQDKKDLAGSAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCW
RNFLSVQTLQAIHSLRKQFTYILKDAQLLDADGSINNRLSHNQSLVRAVICSGLFPGIAS
VVHRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSI
LILFGGGMDCGGMVGNLKMLGGYIDFFMDPSLSDCYVKLKEELEKLLQKKLQDPRLDINK
EGKYLMLAIQELVSGDQCEGRFVFGRESKKPRESSHERFTKDGTNPKSLLQTLLMRAGHS
PPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKVLSEKDAAIEALAWLTQTSEDNHDEDN
KSLPDVTDSMLKLLGKRRRSKRGQSG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcccggctaggaggctttcttgcacatactgccagaaaatcgtcgaatcattct
catttctcttcaacgttccagttctcgctgaacccagatgtcataagactcctatatgcc
ggcaatcgtacttgcttttgtaattttgtggaaaatattcgttggtttaagctgcagaag
ttcagtagttaccctgttatatttcgtaatgggttttgtggctatgccgccgagcagttt
tccgatgatgagtacgaatgtgattatgaaagtcacccggcgtcgtcatcggtggtgaac
attgatgagtggaaatggaagctaagcatgctgttacgtaatgatgaggatcaagaaatt
gtatctagagataaaagagacaggagagactttgaacaaatagccagacttgctaaacac
atgggcctttactgtgaactctatggtaaagtggtagtcgcaagcaaagttcctcttcct
aactacagaccagatttggatgataagcgccctcaaagggaggttgtgatcccattgagc
ttgcaaaggagggttgagggtttgctccaggaacatcttgacaggacattgctgaactct
gaaaaagcagattccactctgagtgaattgaataccaaaattcatgttgaaaatgcaaat
actgatgaaaattcagattcattcctcgatgcttctgttatggagaaagttctccagagg
cagagcttgcgcatgcgtaatatgcagagaacttggcaggagtcacctgaaggcaagagg
atgctagattttagaaggtctctccccaccttcagggagaaggaaaggctccttcaagct
atagctcggaatcaggttacagtgatttctggtgagaccggatgtggtaagaccactcaa
cttcctcagtacatattggagtccgaggtagagtctggtcggggagcattctgtaacatt
atttgcacgcagcctcgaagaatatcagccatgactgtagcagaaagagtctccgcagag
aggggagagcctcttggtgaaacagttggttttaaagtacgattagaaggcaagaaaagc
aagaacacacatttgcttttttgcaccagtggaattttgctccgcaggctcttgagtgat
cacaacctgggtgacataactcatgtttttgtggatgaaattcatgagcgaggcatgaat
gaagactttttgttgattgtcttgaaggatcttcttccaagacgtcgggatttaaggttg
attctgatgagtgccactcttaatgctgatctgttttctgattattttggtggtgcacct
atgattcatattcctggcttcacatatcctgtaacagcacactatctggaagatattctg
gagatgactggatataagttgaattcattcaaccaaatagatgattacggccaagagaaa
atgtggaaaacacagagacaactagcaccacgaaaaagaaaaaaccaaatcaccactctt
gttgaggaagccctgaataaatcaaactttgagaactatagttctgcagtagttgagtca
ttgtcatgctgggcgcctgattgtgttggattcaactttatcgaggctctgttgtgtcac
atatgtcgcaaggagcgtccaggcgctgttttagtatttatgactgggtgggaagacata
agttgtttgagggatcagttaaaagctcaccctctcttaggggaccccaacagggtcttg
cttcttatatgccatgggtcaatggccacctctgaacagagactcatttttgagaaatca
ccttccaatgttcgcaaaatagtacttgcgacaaacatggccgaggctagtataacaatc
aatgacatagtttatgtcgttgactgtggaaaagcgaaggagactacttatgatgcctta
aataacaccccttgtttactaccttcgtggatatcccaagcttccgctaggcagagaagg
ggtagggcgggtcgtgtgcagccaggcgtgtgctaccacttatatccaagatgtgtttat
gaagcttttgctgaatatcaacttcctgaacttctaagaactccattgaactctctctgt
ctgcaaattaaaagtttgcaagttgaaagtatcatcgattttttgtctgctgctcttcag
cctcctgaacctttggcggtgagaaatgccgttgaatttttgaagatgattggtgctttg
gatgaaactgagaatcttacacatcttggaaagtttttgtcggtgctaccagtggatcct
aaacttgggaaaatgctagttatgggttctatatttagttgctttgaccctgtattaacg
attgtggccggtctcagtgtcagggatccttttcttctgcctcaagataaaaaggattta
gcaggatctgccaagtctagattctctgctaaggactacagtgatcatatggctcttgtt
cgtgcctatgaaggatggaaggatgcagaaagagaaggttctgcatatgaatattgttgg
agaaacttcctttctgtccagactcttcaagcgatccattctcttcgtaagcagttcacc
tacattttgaaagacgctcagttgcttgacgcagatggatcgattaataacagattaagt
cacaaccagtctttggttcgtgctgtaatatgctctggtctatttcctggaattgcttct
gttgtgcacagggaaacatcaatgtctttcaagacaatggatgatggccaggtttttctc
tatgcgaattctgtaaacgctcgttatcaaacaatcccatacccatggttggtttttggt
gagaaggtgaaagtcaatacagtattcatacgtgattcgacgggagtatctgattccatt
ttgatcctttttggcggtggcatggactgtggtggtatggtaggcaatttaaaaatgttg
ggtggatatattgacttctttatggatccaagtttgtcagattgttatgtcaagctaaaa
gaggagctagaaaaacttttgcaaaagaagcttcaagatccccgcttggacatcaataaa
gaaggaaagtacctaatgcttgctattcaggagctggtttcaggtgatcaatgtgaagga
agatttgttttcggtcgtgaaagtaagaagcctcgagagtctagtcacgaaagatttaca
aaagatggaacaaatcccaagagcttacttcaaactctgttaatgagagctggtcactca
cctccaaaatataaaacaaaacatcttaagacaaatgaatttcgggcattagtagagttc
aagggcatgcagtttgtgggaaaaccgaagagaaataaagtcttgtctgagaaagatgct
gctatagaagcgttggcttggttaacccaaacgtccgaggataaccatgatgaagataat
aaatctctgcctgatgttactgacagcatgctgaaacttcttggtaaacgaaggaggtca
aaacgggggcaatcaggttga
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