Henckelia pumila: 140864970
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Entry
140864970 CDS
T11037
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140864970
09123 Folding, sorting and degradation
03018 RNA degradation
140864970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140864970
03041 Spliceosome [BR:
hpum03041
]
140864970
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140864970
mRNA degradation factors
5'-3' decay
Lsm complex
140864970
Spliceosome [BR:
hpum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140864970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
140864970
NCBI-ProteinID:
XP_073125529
LinkDB
All DBs
Position
4:223412926..223420670
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AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaacaatccttcgcagcttcttccatctgagctgattgaccgttgcattggg
tcgaaaatttgggttataatgaagggcgacaaggagttggtgggtactctccgaggattt
gatgtctatgttaacatggtgttggaagatgtaacagagtatgagatcacttctgaaggg
cgtcgaatcacgaaacttgatcaaatattgctaaacggaaacaacattgctatactggtt
cctggtggctccccggacccagaatga
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