Henckelia pumila: 140865089
Help
Entry
140865089 CDS
T11037
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
hpum Henckelia pumila
Pathway
hpum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140865089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpum03400
]
140865089
DNA repair and recombination proteins [BR:
hpum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140865089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
140865089
NCBI-ProteinID:
XP_073125697
LinkDB
All DBs
Position
4:complement(154537525..154547220)
Genome browser
AA seq
996 aa
AA seq
DB search
MITLSSRGSRRACVKETPANSSTSSRQSLSPRTHTHTSFSAISTQFPETAVVARTMDKEL
EEQNKLPELKLDAKQTQGFLSFFKRLPRDPRAIRFFDRRDYYTTHGENAIFVAKTYYHTT
TALRQLGNGSDALSSVSVSKNMFETVVRDLLLERTDHTLELYEGTGANWRLVKSGTPGNL
GSFEDILFANNDMQDSPVIVAVSLNVKENIRNVGLSYIDLTRRTLGLAEFPDDSHFTNVE
SALVALGCKECLLSEEINKSSEYKPLMNAFSRCGAMITERKKTEFKARDLVQDLCRLAKG
STDSVRDLLFEFEISPGALACIVSYVNLLADESNYGNYTVQRYDLDSYMRLDSAAIRALN
VFESKTDANKNFSLFGLLNRTCTAGMGKRLLHLWLKQPSVDVNEINSRLDVVQAFVEDGA
IRQDLRQHLKRISDIERLICCLGKKRASLVHVVKLYQSSIRLPFIKSALEQYSGQFSSLI
RERYLDTLEKWTGDAHLNRFIGLVEVAIDLDQLENGEYLISADYNSQLSVLKSEQESLGQ
QIHELHINAANDLELALEKALKLEKGTQYGHVFRITKKEEPKVRKKLNTHFIILETRKDG
VKFTNTKLKKLSDQYQKVVEEYKNCQKDLVAKVVETVASFSEVFEGIAGPLSELDVLLGF
ADLAATCPTPYTRPSINPPDMGDIILEGSRHPCVEAQDWVNFIPNDCKLIRENSWFQIIT
GPNMGGKSTFIRQVGVNVMMAQVGSFVPCESASISIRDCIFARVGAGDCQMRGVSTFMQE
MLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIIEVIKAPTLFATHFHELT
SLAHDNAVDKLSSNKHIGVANYHVSAHIDPSNRKLTMLYKVEPGACDQSFGIHVAEFANF
PECVVALARAKASELEDFSPMEIFRHDADEIIPKRKREWDADDVGRGAERARQFLKDFSE
LPLDKMDLKQALEQVNNLREGLEKDSVSNSWLRQLF
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgattactttgtcgagcaggggctcgagaagggcctgcgtgaaagagacccccgccaac
tcctccacttcttcccgccaatcgctaagcccgagaactcatacgcacacttctttctct
gcaatttctactcagtttccggagactgctgttgttgctagaacaatggacaaggaattg
gaagagcaaaataagcttcccgagcttaaacttgatgctaaacaaactcaagggtttctt
tcatttttcaaaagactacctagggaccctagagccattcggttttttgatcgtcgggat
tattatacaactcatggtgagaatgctattttcgtagcaaagacatactaccacactaca
actgctttgcgccagctaggaaatggatctgatgccctttctagtgttagtgtgagtaag
aacatgtttgaaacagtggttcgagaccttcttttggagaggaccgatcacactcttgaa
ttgtatgaaggcacaggagcaaattggcgactagtgaagagtgggacccctggaaatttg
gggagctttgaagacattctgtttgctaataatgacatgcaagactcccctgtaattgtg
gctgtttcactgaatgttaaggaaaacatacgtaatgttggcttgagctatattgatctg
actagaaggacactcggtctggctgaatttcctgatgatagtcacttcacaaatgtggag
tcagctcttgttgctctaggatgcaaagaatgcctcttgtctgaagagattaacaaatct
agtgaatataaaccattgatgaatgcattttccaggtgtggtgcaatgataacagaaaga
aagaaaactgagtttaaagcaagagatttggtacaggatctttgcaggcttgcgaaaggg
tctactgactcagtaagagatctgctctttgaatttgaaatctcaccaggtgccctagcg
tgtatcgtgtcttatgtaaatttacttgcagacgagagcaattatggtaactatacagtg
caaagatacgatcttgatagttacatgagattagactccgctgctataagggcactaaac
gtctttgagagcaaaacagatgctaacaaaaactttagcttatttggccttctgaataga
acctgtactgctggaatgggcaagcgattacttcatttgtggctgaaacaaccttcggta
gatgtaaatgagataaactctagactggatgtggttcaagcttttgttgaggatggagcc
attcgtcaagatttaaggcagcatttgaaaagaatttcagatatagagaggcttatctgc
tgtcttgggaagaaaagagcaagtttggtgcacgtggttaagctttaccagtcgagcatc
agattgccattcatcaaaagtgcattagagcagtacagtgggcagttttcttcactgatc
agagaaaggtatttggatactctagaaaaatggacaggagatgctcatttgaataggttc
attggtcttgtggaagttgcaattgaccttgatcaactcgagaatggagaatacttgatt
tcggctgactataattcacaattatctgttttgaaaagtgagcaagagtctttgggacag
cagatacatgaattgcacataaatgcagctaacgatcttgagctggcccttgaaaaagct
ctgaaactggaaaaaggcacacaatatggacatgtctttagaattacgaaaaaagaagaa
ccaaaagtaaggaagaagctaaatacccattttattattcttgaaactcgaaaagatggg
gtaaagtttaccaataccaaacttaaaaaactaagtgatcaataccaaaaggtggttgag
gagtataagaactgccagaaagatttggttgcaaaagtagttgaaactgttgctagcttt
tctgaggtgttcgaaggaattgctggacctctctctgaattagatgttttacttggtttt
gctgatttggctgctacttgtccgactccctacacacgacctagtatcaatccacctgat
atgggagacattattttagaaggaagtcggcatccttgtgttgaagcacaagactgggtg
aactttatcccaaatgattgcaagctaatcagggaaaatagctggttccagattatcaca
gggcctaatatgggtggaaagtcaactttcatacgacaggtgggcgtgaatgttatgatg
gcacaagttggttcctttgtcccatgtgaaagcgccagcatttctattcgtgattgtatt
tttgcaagagtaggtgctggtgactgccagatgcgtggagtttcaactttcatgcaagaa
atgctagaaactgcatcaatcttgaaaggagctacagacaagtctttaataataattgat
gagttaggtcgtggcacatcaacctatgatggatttggtttggcttgggctatttgtgag
cacataattgaagttataaaagcacccaccctgtttgcaactcactttcatgagttgacg
tcattagctcatgataatgctgttgataagctatcttcaaacaagcatataggagtagct
aattaccacgtgagtgcacacattgacccatcaaatcgcaagcttaccatgctttacaag
gttgaaccaggtgcctgtgatcaaagctttggaatacatgtagcagaatttgccaacttt
ccagaatgtgttgttgctcttgcccgcgcaaaggcttctgaattggaagatttttcgccc
atggaaatttttcgccatgatgcagatgagattataccaaaacggaagcgagaatgggat
gctgatgatgtaggtaggggcgctgaacgagctcgccagttcttgaaggacttctctgag
ctgccgctggacaaaatggacttgaagcaagcgttggaacaagttaacaatttgagagag
ggattggagaaggattccgttagcaatagctggctccgacagttattctag
DBGET
integrated database retrieval system