Henckelia pumila: 140865814
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Entry
140865814 CDS
T11037
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
hpum Henckelia pumila
Pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140865814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hpum03041
]
140865814
Spliceosome [BR:
hpum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140865814
Complex C
U5 SnRNP specific factors
140865814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
KapB
Motif
Other DBs
NCBI-GeneID:
140865814
NCBI-ProteinID:
XP_073126688
LinkDB
All DBs
Position
4:complement(148260250..148271748)
Genome browser
AA seq
2374 aa
AA seq
DB search
MYSNGQEMWNNSMNNLAPPGTGGSGGAVGMPPPPPPPPGTSGVPPVAPPHPPSLPPSYTV
VPSEVQLDERARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRH
DKRVYLGALKFVPHAVYKLLENMPMPWEQVREVKVLYHITGAITFVNEIPWVVEPIYLAQ
WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVDPLEPIQLEMDEEEDSAV
HTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLSGQLLSDLTDGNYFYLFDMESFF
TAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRP
RKVKLCIYHIPMVMYIKTEDPDLPAFYYDPLIHPITSTNKDRRDKKNYEEDEDDDFVLPE
EIEPLLSGTPIYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWFKEHCPPSYPVK
VRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYN
MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANI
QFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVG
KGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFD
LELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRY
VKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVT
PEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQRE
ELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYL
DQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFE
KFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQ
YFGLVLDLLLLGLTRASEIAGPPQMPNEFITFHDTRVETRHPIRLYSRYIDKVHILFRFT
HEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLP
RSITTLEWENSFVSVYSKDNPNLLFSMSGFEIRILPKIRMTQEAFSSTKDGVWNLQNEQT
KELTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLR
HSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWLMSK
PSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYNRAKFMDYTTDNMSIYPAPTGV
MIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEP
YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKV
IHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILR
ALHVNNEKAKMLLKPDKTIVTEAHHIWPSLSDEQWMKVEVALRDLILSDYAKKNNVNTSA
LTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSP
YEQAAFGSKTDWRVRAISATNLHLRVNHIYVNSEDIKETGFTYIMPKNILKNFICIADLR
TQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQ
PNELPQLSPQDLASHARILSNNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGKSN
TDAVSNPHGYLPTFYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGMKLGTP
REYYHEDHRPTHFLEFSNLEEVETAEGDREDTFA
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcaacggtcaagaaatgtggaataatagtatgaacaatctggcgccgccgggg
acgggtggaagcggcggagctgtggggatgcctcctcctcctcctcctcctccgggaacg
agcggggtgccaccggttgctcctcctcacccgccttctttgccgccatcgtacacagtg
gttccgagcgaggtgcagctcgacgagagagccaggaagtggatgcagctcaactcgaaa
cggtatagcgataagaggaagttcgggtttgttgagacgcagaaggaggacatgccaccc
gaacacgtgaggaaaatcattcgggaccatggtgatatgtcatcaaagaaatttcgtcac
gacaaacgtgtttatttaggagctcttaagtttgtcccgcatgctgtatataaacttctt
gaaaatatgcccatgccttgggaacaggttcgtgaagtgaaggttctttaccatattact
ggtgctatcacctttgtaaatgaaataccatgggttgttgaaccaatctatttagcacag
tggggaactatgtggatcatgatgcgaagagagaaaagagacagacgacacttcaagaga
atgcgctttcctccatttgatgatgaggaacccccactggactatgctgataatatccta
gatgtggatcccttggagccaatccagttagagatggatgaggaagaagattcagcggtt
catacttggttctatgatcataaacctcttgtcaaaacaaaacttataaacggacccagc
taccggaagtggcatctgtcacttccaattatggccacactacaccggctttctgggcag
ttgctttctgatttgacggatggcaattatttttatctttttgacatggagtcatttttc
actgcaaaggcactgaacatgtgcattcctggtggacctaagtttgaacctttgtatcgc
gacatggagaaaggtgatgaagattggaatgaatttaatgacattaataaacttatcatc
cggtctcctctcaggactgagtacaggattgcattccctcacctatataataatagaccc
aggaaagtaaagctttgtatctatcacattccgatggtgatgtacataaaaactgaggat
cctgatttacctgcattttattacgatcctctgattcacccaataacaagtacaaataaa
gataggcgagataagaagaattatgaagaagatgaagatgatgattttgtcttgcccgag
gagattgaaccattactttccggcactccaatctacactgacactacagctgctggaatt
tcactgttgtttgccccacgcccctttaacatgcgatctggtcggatgcggcgggctgaa
gatatacctcttgtatctgaatggtttaaggaacactgtcctccatcataccctgttaaa
gttcgagtcagttaccagaaactgttgaaatgctttgtgttgaatgagctgcatcaccga
cccccaaaggctcagaaaaagaagcacttattcaggtctctgcaagccacaaagtttttc
cagactactgaactcgattgggctgaagccggtcttcaagtttgtaagcaagggtacaat
atgctgaatttactgatccataggaagaatttgaactacctccaccttgactataatttt
aacttgaagcctgtgaagacccttactaccaaggaacgtaaaaaatcacggtttggtaat
gcttttcatctttgtcgtgaaattctgcgtttgacaaagcttgttgttgatgcgaatatt
cagttccggttgggcaacgtcgatgcatttcagttggcagatgggctgcaatacattttt
tcacatgttggtcagttaaccggtatgtaccggtacaaatacaggctcatgaggcagatt
cgaatgtgcaaagatttgaagcatttgatttattacagatttaatactgggcctgttgga
aagggtcctggatgtggtttttgggcacctatgtggagggtatggttgttttttcttcgt
ggaatagtgcctctcttggaaaggtggttagggaatttacttgctagacagtttgaggga
cgtcattccaaaggagtggctaaaacagtgacaaagcagcgtgttgaaagtcactttgat
ttggagctacgtgctgctgtcatgcacgatgttcttgatgctatgccagagggtattaaa
cagaataaagcaagaactattttgcagcatttaagtgaagcatggcgttgctggaaagca
aatattccctggaaagtacctggtttacctgttcccattgagaacatgatactccgttat
gtcaagtcaaaagctgattggtggacgaatgtcgctcattataatcgtgaacgtatcagg
agaggagcaacagttgataaaactgtttgtcgaaagaatcttggaaggttgactcgcctt
tggctaaaggcagaacaggaacgccaacacaactatctgaaagatggcccatatgtcact
cctgaggaagcggtggcaatatacacaactactgtgcattggttggaatcaagaaaattc
tctcctataccattccctccattatcttacaagcatgacacaaagctcctcattcttgct
ttggagagattgaaggaatcttatagtgttgctgtcaggctaaaccagctacaaagagaa
gagttgggtctgattgagcaggcctatgacaatcctcatgaggcgttgtctcggattaag
cgtcatttgcttacacagcgtgccttcaaagaagttggcattgagttcatggatttgtat
agctatctaattccagtttatgagattgaaccacttgaaaagattaccgatgcatatctc
gatcagtacctgtggtacgaaggtgataagcgccacctttttccgaattggattaagcct
gcagattcagaaccaccaccattgctagtttacaaatggtgccagggtataaataactta
caaggcatttgggacactagtgaagggcagtgtgtggtgatgcttcagaccaaatttgag
aaatttttcgaaaaaattgatctcactatgcttaacaggcttcttcggctggttcttgac
cataacatagctgattatgttactgcgaagaataatgttgtcctttcgtacaaagatatg
agtcatacaaactcatatggacttattcgtggtctgcagtttgcttcttttgtggtgcag
tactttggacttgtcttggatcttctacttctgggtcttactcgagccagtgaaattgct
ggtcctccgcagatgcctaatgagtttattacattccatgacactagagtcgaaacacgg
catccaattcggttgtactccagatacatcgataaggttcatatactatttcgttttact
catgaagaggctcgggaccttatccagagatatctcacagagcatcctgatcccaacaat
gaaaatatggttggttataataacaaaaagtgctggccaagagatgccagaatgcgactc
atgaagcatgatgtcaatctagggaggagtgtcttttgggatatgaagaaccgcttacct
agaagcatcaccacacttgaatgggagaacagctttgtgtctgtctacagcaaagacaat
ccgaacttgctctttagcatgtctggatttgaaattcgtatcttaccaaagataagaatg
actcaagaggcttttagcagtacaaaagatggggtttggaacctccaaaatgaacagaca
aaagaactcactgctgttgctttcctacgggtagatgacgaacacatgaaagtgtttgag
aatagagtaagacagattctcatgtcctctggttcgacaacatttacaaagattgtcaac
aaatggaatacagctcttatagggcttatgacttatttccgtgaagcaactgtgcacaca
caggagctgttagatttactagtaaaatgtgaaaataaaatacagactcgtattaagatt
gggctgaactctaagatgcctagcaggttcccaccagtcattttttacacaccaaaggaa
attggaggtcttggaatgctttcaatggggcacatattgattccccagagtgaccttcgg
catagtaaacagacagatgttggcgtgactcattttagaagtggaatgagtcatgaagag
gaccagttgattcccaatttgtatcgctacatccagccatgggagagtgagttcattgat
tcacagcgtgtttgggctgaatatgcattgaagaggcaggaagcccaggcacagaacaga
cgtttaacactggaagatttggaagattcctgggatcgtggaatacctcgaattaatact
ctatttcaaaaggatcgacacacccttgcctatgacaaagggtggagagtgagaacagat
tttaaacaatatcaggtcctgaaacaaaatccgttttggtggacacaccagaggcatgat
gggaagttgtggaacttaaacaactatcgtactgatgtcattcaagctctgggaggagtt
gaaggaattcttgagcatacattgtttaagggaacatacttccctacatgggagggtctt
ttctgggagaaagcttcaggttttgaggagtccatgaagtataagaaattgaccaatgca
caaagatctgggctcaatcaaatacccaacagaaggtttacactatggtggtcaccaact
ataaaccgagcaaatgtatatgttggcttccaagtgcagctggatcttacagggattttt
atgcatggaaagataccaacgctcaagatatctctgattcagatattccgtgcgcatttg
tggcagaagatacatgagagtgtggtgatggacctttgccaggttttggatcaagagttg
gacgcactggagattgaaactgttcagaaagaaacaattcatccgagaaagagctacaaa
atgaacagctcgtgtgctgacattctcctctttgccgctcatagatggcttatgtcaaag
cccagtctcgtggctgaatcaaaggatgtgttcgaccaaaaggccagcaataaatactgg
atagatgttcaacttcgctggggtgactatgattcccatgatattgaacgatataacagg
gcaaaatttatggattacacaacagataatatgtccatctatccagcaccaactggggta
atgataggacttgatcttgcctacaacttgcattctgcgtttggaaattggttccctggg
tcaaaaccattacttgctcaggccatgaacaagattatgaagtcaaatccagcattgtac
gtgttaagagaacgtataagaaaagggttgcaattgtattcctcagaacctacagagcct
tatctatcatctcagaactatggggagatatttagcaatcagattatctggtttgttgat
gacacaaatgtttatcgagtcaccattcacaaaactttcgagggaaatcttacgaccaaa
cctattaatggtgccatttttattttcaaccccagaactggtcaacttttcctgaaggtt
attcacacaagtgtctgggctgggcaaaagcgtcttggtcagcttgccaagtggaaaact
gctgaagaagtggctgctctggtacggtcattgcctgtagaggaacaaccgaagcagatc
attgtgactcgcaagggcatgttggatccattggaagtccacttgcttgatttcccaaat
attgtgataaaaggaagtgagctacagttacctttccaggcttgcttgaagattgagaaa
tttggcgatctaatattgaaggccacagagccacaaatggtgttgtttaacatttatgac
gattggctgaaaagtatctcatcttacacggcattctctaggctgatattgattttgcgt
gctctccatgtcaacaatgagaaggctaagatgttgctgaagcctgataagacaattgtc
actgaggctcaccacatctggccttcgttatcagatgaacagtggatgaaggttgaagtt
gctctgagagatcttatactttccgactatgcgaagaagaacaatgtgaacacatcagca
ttaacccagtctgagatccgtgatataattcttggtgctgagattactccaccttcacaa
cagcgacaacaaattgctgagatcgagaaacaggcgaaggaggctagtcagctcacagca
gtcactacgaggaccacaaatgtgcatggagacgaattaatagtcaccactacaagtccc
tatgagcaagcagcatttggttcaaaaaccgactggcgagtcagagcaatatctgccaca
aatcttcatctccgtgtgaatcacatatatgtgaactctgaagacatcaaggaaaccgga
ttcacgtacatcatgcctaaaaatattctgaagaactttatatgtattgctgacctccgg
acccaaatttctgggtatctttatggcataagtcctccagacaaccctcaagtcaaagag
attcgttgtattgcaatgccgcctcagtggggaactcaccagcaggttcatcttccgtca
gctcttcctgagcatgatttcctgaacgatttggagcctctaggatggatgcatacgcaa
ccaaatgaacttcctcagctgtcaccccaggaccttgcttcacatgcgcggatcttgtca
aacaacaaacaatgggatggagagaagtgcataattctgacctgcagtttcactccgggt
tcttgctctttaaccgcgtataagttgaccccttctggttatgaatgggggaaaagcaac
accgatgctgtgagcaacccccatggctaccttccaactttctacgagaaagttcaaatg
ctcttgagtgatagattcctcggtttctacatggtaccggacaacggtccatggaattac
aattttatgggggtgaaacatactgtgagcatgaaatacgggatgaaactcgggacgcct
cgagaatactatcacgaggatcatcggcctactcatttcctggaattcagcaacttggag
gaagtcgaaaccgcagaaggtgatagggaagatacctttgcttaa
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integrated database retrieval system
