Henckelia pumila: 140867386
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Entry
140867386 CDS
T11037
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140867386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140867386
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140867386
mRNA degradation factors
5'-3' decay
Decapping complex
140867386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EDC4L
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
GerPC
DUF5536
WDR55
Beta-prop_EML_2
DUF2497
Motif
Other DBs
NCBI-GeneID:
140867386
NCBI-ProteinID:
XP_073128561
LinkDB
All DBs
Position
4:complement(3077506..3086614)
Genome browser
AA seq
1435 aa
AA seq
DB search
MATSGNPNPPAGAPPFDMPKFFRPSTSPAATPASSPNPQNIANSDSAFTNPNLISAPFPP
PSASFPPPAASGGGQYSYPPQASPFLHQPQFHHLPMYSPPSNSREFANLHPQRSMSYPTP
TLQPQVPVPSSPHHLNFQAPANPQNPNNHGARLMALLSAPPSTLDIPNESTMQMPQTLPN
SAGSDFSMPQFVNNLPSGPGLSVSHQGPVLRMLSNKLPKGRHLNGDHLAYDIDFRLPGEV
QPQLEVTPITKYVSDPGLVVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRV
TDMAFFAEDVHLLASASVDGRVYVWKITEGPDEEDKQQITGRIVTAVQITGEGESVHPRI
CWHCHKQEVLAVGIGKHILKIDTTKVGKGEKFSADEPLKCTVDKLIDGIQLVGSHDGEVT
DLSMCQWMTTRLVSASVDGTIKIWGDRNPLPIAVLQPHGGQPVNSVTFLPAPHRPDHIIL
MTGGPLNREVKIWVSASEEGWLLPIDSESWHCVQTLELKSSEARTEEAFFNQVIALSQAG
LLLLANAKRNAIYAVHLEYGPNPAATRMDYIAEFTVTMPILSFTGTSESLPNGEQVVQVY
CVQTQAIQQYALDLSQCLPPAIGNVVYEKSDSSVSREASIIEGLTNLESSGIKATEVPIT
SSAPSSSMYESGLENIPAVRYPVDHVSAESPSLQEFAPSSMESKVIPSPVIASDSNLSSV
ASPSLPLSPRLSGTLSGFRNPSSSFEHGVLSNDRSVEPKIVEYTVDRQMDAIHSNSSDVA
SFDGDSRNYENKHSQDDISLALNHPIKFRHPTHLVTPSEILMANSSSEVIHTTEAQSEVE
LKIQDVVMSNDTRNFVVEVKVVGETKFDQNIDDESREELQTFLSEKRESIFCSQASDLGI
EMARECHAVSPEAYIVEEDRQFDGTGVTETVAQPSTVEEDIHDSTKVGPSSVIDSSIPVL
SPQPAPNAKGKKQKGKIAQGSGPSSPSPSAFNSADSSNEPGIGYGTPVESQIYSMREILH
QLVALQKDMQKQMTTMIAVPVTKEGKRVEASLGRNMEKAVKANADALWARLQEENAKQEK
ASRERAQQVTNTISSFLNKDLPSLIEKTVKREVSSLGQSVARAIVPTIEKAISTSVVESF
QKGVGDKAVNQLEKSVNSKLEAMVARQIQSQFQTSGKQALQETLKSSLEVSMIPAFEMSC
REMFEQVDSAFRKGMVEHTAAAQQQFEASHSSLALVLRDAITSASSMSQTLSNELLDGQR
KLVDLAVAGVNSKAANPLLNQLSNGPLGGLHEKLEVDPTKELSRLVAERKYEEAFVAALH
RSDVTVVSWLCSHVDLPTLLAMNPLPLSQGVLLSLLQQLACDISKETPRKLTWMREVLTA
INPADPVIMVHVRPIFQQVYQILDHHRSIPTTTGSELSNIRLIMHVIHSMLMGSK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctctggaaatcccaatccacccgccggagctcctcctttcgacatgcccaag
tttttcaggccttcgacttccccggcagcaacacctgcttccagccccaatccccaaaac
attgccaacagtgatagcgccttcactaaccctaatttgatttcagctccctttccgccc
ccctcggcctcttttccgccgccagccgcttccggcggagggcagtattcgtatcctcct
caagcctcgccgttcctccaccaaccccagttccaccatcttcctatgtacagtccccca
tccaactctcgggaatttgcgaaccttcacccccaaaggtccatgtcttatcctaccccc
accctccaaccccaagttcccgtgcctagttccccccaccaccttaacttccaagcccct
gctaatccccaaaaccctaacaaccatggtgctcgtttgatggcgcttttgagcgctcca
ccttcaacgctggacattccaaacgagtccacaatgcagatgccccaaaccctccccaat
tctgcaggctcagatttttctatgccacaatttgtgaacaatttgccatccgggcctgga
ttatcagtttcacatcaaggccctgtcttgcggatgttgagtaataaactccccaaggga
aggcatttgaacggcgatcatttggcttatgatatagattttaggttgccaggagaggtc
cagcctcagcttgaggttacacccattaccaagtacgtctcagacccaggacttgtagtg
ggcaggcaaattgcagtgaataaaacatatatatgctatggacttaagttgggggctatt
agggtgcttaatatcaacactgccttaagatccttgctcaagggcctagctcagagggtc
acagacatggctttctttgccgaggatgttcaccttttagctagtgcaagtgtcgatggt
cgtgtctatgtgtggaagattactgaaggtcctgatgaagaagacaagcagcaaattact
gggcgaattgtcactgctgttcaaattaccggagaaggagaatctgttcatccccgaatt
tgttggcattgtcataaacaagaagttcttgctgttgggattgggaagcacattttgaag
attgatactacgaaagtgggaaaaggagaaaaattttcagccgacgaacctctaaaatgt
accgttgataagttgatcgatggcatccaacttgttggtagtcacgatggggaagtgact
gacttgtctatgtgccagtggatgaccacccgtttggtatctgcttcagtagatggcacg
attaaaatttggggagatcgaaatccactaccaatagcagtcctccagcctcatggtgga
caacctgtaaactctgtcacatttttgcccgctcctcatcgcccagaccatataatactc
atgacggggggccctctgaatcgggaagtgaagatatgggtatcagcaagtgaggaaggt
tggttacttcctattgattctgaatcttggcactgcgtgcagacattggaattaaagagt
tcagaggctcgaacagaagaagctttcttcaatcaagtgatagccttgtcacaagctggt
cttcttttattggcaaatgccaaaaggaatgctatatatgctgtgcacttggaatacggt
cctaatcctgctgctacacgcatggattacatagccgaatttacggtcacaatgccaata
ttgagttttacagggacgagcgagtcactaccaaatggtgagcaagttgttcaggtatat
tgcgtccagacacaggctattcagcagtatgcattggacttgtctcagtgtctgcctcca
gcaataggaaatgtggtgtatgagaagtcagactccagtgtttcacgcgaagcttctatt
atagaaggacttaccaatttggagtcttctggaattaaagcaacggaggtacctataact
agttctgcaccttcatcgtccatgtatgaaagtggcttagagaatatacccgctgtgaga
taccctgttgaccatgtttctgccgagtctcccagccttcaggagtttgctccctcaagt
atggaaagcaaagtgataccttcacctgtaattgctagtgatagtaatctttcttctgtt
gcttcaccttctctacctttgagccctaggctgtctggaacactttctggttttagaaat
ccatcaagcagttttgagcatggtgttttgagtaatgaccggagtgtagagcctaaaatt
gttgaatatacagtagacagacaaatggacgccattcatagtaactcgtcagacgtagct
tcatttgatggtgattcaagaaactatgaaaataagcattctcaagatgatatctccttg
gcactcaatcatccaataaaattcagacaccctactcacctggttactccttctgagata
ttgatggccaattcatcctccgaggtgatacacacaactgaagcccagagcgaagttgaa
ctaaaaattcaagatgtggtaatgagcaatgatacgaggaattttgttgtagaggtaaag
gttgtgggtgaaacaaaatttgatcaaaatatcgacgacgaatctcgagaagaacttcag
acttttctgtctgaaaagagggaaagtatcttttgctctcaggcatctgacctaggaatt
gagatggcccgagaatgccatgccgtatcaccagaagcttatatagtggaggaagatcgc
cagtttgatgggactggagttactgaaactgttgcccaaccttcaaccgtagaagaagat
attcatgactccacaaaggttggtcccagcagcgtcattgattcgtcaattcctgtgttg
tctccgcaacctgcaccaaatgccaagggaaagaagcaaaaggggaaaattgctcaagga
tctggcccatcttcaccctcaccaagtgctttcaattcagcagactcttctaatgaacca
ggcatcggctatggtactcctgtagaatcacaaatttattccatgcgagagatcctgcat
cagcttgtagctctgcaaaaagacatgcagaagcagatgacaacaatgattgctgtccct
gttaccaaagaaggcaaaagagttgaggcatcattgggacggaacatggagaaagctgta
aaagctaatgctgatgctttatgggctcgattgcaagaagagaatgcaaaacaggaaaag
gcatctcgggagcgagcacagcaagtaacaaatacgatcagcagtttcttaaacaaagat
ttaccttcattgatagagaaaactgtgaaacgagaagtttcttcacttgggcaatctgtg
gctcgggctatcgttcccacaattgagaaagcgatatctacttctgttgtggagagcttc
cagaaaggggtgggtgataaagctgttaatcaactggaaaaatcagtcaactccaagctt
gaggctatggttgctaggcaaatccagtcacaatttcaaacttcaggcaagcaagctctt
caggaaacactgaaatcaagtttggaagtttctatgatccctgcatttgaaatgtcgtgc
agggaaatgtttgagcaggttgattccgcctttcggaaaggaatggttgaacatactgca
gcagctcagcagcagtttgaggcttcacattcatctcttgcacttgttttgagggatgct
ataacttcggcatcatcaatgtctcaaactttgagcaatgagttgcttgatggtcaaagg
aaattggtagatcttgctgttgcaggtgtaaattctaaagcagcaaatcctttgctaaat
cagctgagcaatggccctttgggtggtctacacgagaagctcgaggttgatccaacaaaa
gagctttctaggttggtagctgagcggaagtatgaggaggcttttgttgctgccttgcac
aggagtgatgttactgttgtatcatggttatgttctcatgttgatttgcctacgcttttg
gccatgaatccactgccattgagccaaggggtactcctctctcttctacagcaattggcc
tgtgatattagcaaggaaacccctcgaaaactaacttggatgagggaggttctaactgct
ataaatcccgccgacccagtgattatggtgcacgtacgtcccatctttcagcaagtatat
caaatattggatcaccatcgcagcatcccaaccactacgggttccgaactttccaacatt
cggttgatcatgcatgtcatccattccatgcttatgggctctaaatga
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