Henckelia pumila: 140867646
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Entry
140867646 CDS
T11037
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
hpum Henckelia pumila
Pathway
hpum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140867646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140867646
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140867646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_SCAP
WD_LRWD1
Beta-prop_DCAF12
Tricorn_2nd
PROPPIN
WD40_like
WDR54
Motif
Other DBs
NCBI-GeneID:
140867646
NCBI-ProteinID:
XP_073128798
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Position
4:complement(14712445..14729532)
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AA seq
773 aa
AA seq
DB search
MYGGDPQHHQQQHSRPPLGPPLPQPPLHPHPNPHQFQHQHQQQPQHFHHQQLHDFPRGPH
PPPGPPPPQIMRQPSASSTTLNTPPPDFQHPSAQPPFSMQQPYDANADSFAAKRMRKIGQ
RRAVDYTSTVVRYMQIRMSQANARDRTVLQPTLAAAIDMLPALAYSDNPSTSFTAKFVHT
SLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHEQAVRSMVWSYNE
NWMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRGLSFCRTDLKFCSCSDDTTVKVWDFA
RCQEERSLSGHGWDVKCVDWHPSKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCV
SWNQNGNWVLTASKDQIIKLYDIRAMKELQSFRGHRKDVTALAWHPFHEEYFVSGSFDGS
IFHWLVGHESPQVEIQNAHDNSVWDLAWHPIGYILCSGGNDHATKFWCRNRPGDTSRDKF
IPGQNQAGISEQSPALGGRVPGPFQVSELPTTPGPFGMGMPRNEGTIPGIGVAMPLSLNS
LDSSVQGDQKIPPLSVSMPMGGAPPLPPGPHPSLLTSNQHQSYQQNAAQAQQHQSLPQHM
SSLPFPAQNLPQPQPTSHLPFAPHPHLPRPPPQMQPHNMPSNVPFSMPGSLPNQSMPNSV
PVPMPGQMQGGMNHMGPPLPQGHFMGMNPMPSGSGPPGNIPPGGPSNTIGIQMYPPGGGF
SRPQAGQMPMMPGLNHYPSGNTNAPGMQTNFSIQSGLPPPLPPGPPPHGQAHQ
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcggagatccccagcatcaccagcagcaacactcacgtccgcctctgggtccg
ccgctgccgcaaccgccgctgcacccgcaccccaatcctcaccagttccagcatcagcat
cagcagcagccgcaacatttccaccatcagcagctacatgatttcccgcggggtccacac
cctccaccgggtccaccgccgcctcaaataatgcggcagccttctgcttcctcaactact
ctcaacactcccccacctgattttcaacatccgtctgctcagccccctttctctatgcag
cagccgtatgatgctaatgcggatagttttgctgcaaaaagaatgaggaaaattggacaa
agacgagcagttgattatacaagtactgttgtacgatatatgcagattcgcatgtcccag
gccaacgcaagagacaggacagtattgcagcccaccctggccgccgctattgatatgtta
cctgctttggcatactcagataacccatcaacaagtttcacggcaaagtttgtacataca
tcattgaataaaaatcgctgttcgattaatcgagttctgtggactcctagtggtagacgt
cttattacaggatctcagagtggagaattcacgctttggaatggacagtcatttaatttt
gaaatgatattacaggctcatgaacaagctgtcagatcaatggtttggagttataatgag
aactggatggtcactggggatgatggtggctcaataaagtattggcaaaataacatgaat
aacgtgaaagccaataaatctgctcacaaagaatcagtccgtggcttaagtttctgtagg
acagatttgaagttttgctcctgttctgatgacacaactgttaaagtctgggactttgct
aggtgtcaagaggagcgatcattatctggccacggttgggatgtaaagtgtgttgactgg
catcctagcaagtcattattggtctcaggcgggaaggacaatcttgtcaagctatgggat
gctaagtcggggagagaactctgttcatttcatggacacaagaatacagttctgtgtgtg
agttggaatcaaaacggtaattgggtcttaacagcttcaaaagaccaaatcatcaagctt
tatgatataagggcgatgaaggagcttcaatcttttcgtgggcaccggaaggatgtcaca
gcactagcttggcatccatttcatgaagaatactttgttagtgggagttttgatggatca
attttccattggctagttgggcatgaatctccgcaggttgagatacagaatgcacatgat
aacagtgtctgggaccttgcatggcatcctattggatacattctatgcagtggaggaaat
gatcatgcaacaaaattttggtgcagaaacaggcctggtgacacttcacgtgataaattc
atccctggacaaaatcaagcaggtatcagtgagcaaagtcctgctttgggaggccgggtt
cctggtcctttccaagtgtctgagctcccgacaacccctggtccatttggaatggggatg
cctcggaatgagggaacaatcccaggaattggagttgcaatgccactatctcttaattct
cttgattcatctgttcaaggagatcaaaagataccacctctatcagtttcgatgcctatg
gggggagcccctcctctgccgcctggtccacacccatctcttctcacaagcaaccaacat
cagtcttatcaacaaaatgctgcacaagcccaacagcaccaatctttaccgcagcacatg
tcctctttaccatttccggcacaaaatctgcctcagccacagcccacttctcatttacct
tttgcaccacatcctcatttacctcgccctcccccgcagatgcaaccacataatatgcct
tcaaatgtaccattttcaatgccagggtctttacctaatcaatccatgccaaattctgtc
ccagtgcccatgcccggtcaaatgcagggtggtatgaatcacatgggtccaccgttgccc
caaggtcattttatgggcatgaatcccatgccttctggatcaggaccaccaggaaatatt
cctccaggtggaccttccaacacaattggcattcaaatgtatcctcctggtggtggcttc
agcaggcctcaagctgggcagatgccaatgatgcctggtcttaatcattacccgtctgga
aatacgaatgcacctggaatgcagacaaattttagcattcagtcaggacttcctccaccg
ttgccccccggccccccgccacacggtcaagctcatcagtag
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