Henckelia pumila: 140871304
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Entry
140871304 CDS
T11037
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hpum Henckelia pumila
Pathway
hpum03013
Nucleocytoplasmic transport
hpum03015
mRNA surveillance pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140871304
09122 Translation
03013 Nucleocytoplasmic transport
140871304
03015 mRNA surveillance pathway
140871304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140871304
03041 Spliceosome [BR:
hpum03041
]
140871304
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140871304
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140871304
Spliceosome [BR:
hpum03041
]
Complex C
Other components
EJC/TREX
140871304
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140871304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
140871304
NCBI-ProteinID:
XP_073129854
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEEDEKAADSVTAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LARDKELSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaataaggagaacgacgcttacgaagaggagcttctcgactacgaggaggaa
gacgagaaggccgcagactccgtcaccgccaaagttaacggcgagtccgccaagaagggt
tatgtaggcattcacagttcaggattcagagatttcctcttgaagccagagctattacgg
gctattgtggattctggatttgagcatccgtcagaagtgcaacacgaatgcatacctcaa
gctattttgggcatggatgttatttgccaagcaaaatctggtatggggaaaactgcggtg
tttgttctctcaacattgcagcagattgaacctattgcaggccaagttgctgctctcgtt
ctgtgtcatacaagggaattggcttaccagatctgtcatgaagttgagcggttcagcaca
tatttaccagatatcaaagttgctgtcttttatggtggtgtcaacattaaagtccacaag
gatctcttgaagaatgaatgccctcacattgtcgtgggaaccccgggaaggatacttgct
ctggcaagagacaaggaactttctctgaggaatgtgaggcatttcattctggatgaatgt
gataagatgctcgagtcccttgatatgaggagagatgttcaggagatctttaagatgaca
cctcatgataaacaagttatgatgttttcagccacactcagcaaggagattcgaccagtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaagttgacc
ctccatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccggaagctg
aatgatctacttgatgcattggacttcaatcaagtcgtcatttttgtcaaaagtgttaat
agagctgccgagctcaacaagttgcttgtggagtgtaatttcccatcgatttgcattcat
tctggcatgtcccaggaagaaagattgactcggtacaagggattcaaggaagggcacaag
agaattctagttgcaacagatctggtgggaagaggaatagacattgaacgggtgaacatt
gtgattaactatgatatgcctgattcagctgacacttatctccatcgggtgggtagggcc
ggacgatttggaaccaaaggacttgccatcacgtttgtttcatctgcatctgattcagat
gttctgaatcaggttcaggagagatttgaagttgacatcaaagaacttccagagcagatt
gatacatctacatacatgccgtcttga
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integrated database retrieval system
