Henckelia pumila: 140874143
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Entry
140874143 CDS
T11037
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
hpum Henckelia pumila
Pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140874143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140874143
03041 Spliceosome [BR:
hpum03041
]
140874143
03036 Chromosome and associated proteins [BR:
hpum03036
]
140874143
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140874143
Spliceosome [BR:
hpum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140874143
Complex B
140874143
Complex C
U2 SnRNP specific factors
140874143
Chromosome and associated proteins [BR:
hpum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
140874143
TFTC complex
140874143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
140874143
NCBI-ProteinID:
XP_073133528
LinkDB
All DBs
Position
1:72958358..72964194
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQATGIICAINGSFSGGKSQEIVVARGKVLDLLRPDDNGKLQSLLSVEIFGV
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNAFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFENPI
FAAIELDYAEADQDPTGQAANEAQKQLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDMFKVTLDHENDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDEPDVEASSATLMETEEGFQPVFFQPRKLKNLLRIDQIESLMPMMDMKVTNLFEEETPQ
IFSLCGRGPRSSLRVLRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGEIIYFEVDMTGQLMEVEKHEMSGDVACLDISPIPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSLQSVSSPPESLLFLEVQASTGGDDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRIFTIERLGESFNETAIPLRYTP
RKFVVQPKKKLLVIIESDQGAFTAEEREAAKKESFESSGVGENGNIVQMENGDDEENNDP
LSDEQYGYPKAESGKWVSCIRVLDPRSALTTCLLELQDNEAAFSMCSVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNTITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHIDFDTVAGSDKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHIGDVVTCLQKASLIPGGGECIIYGTVMGGLGALLPFTSRDDVDFFSHLE
MHMRQEHPPLCGRDHIAYRSSYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgtacagcttgacccttcaacaagctacaggcatcatctgtgccatcaatgga
agcttctctggcggcaaatcacaagaaatcgtggtggcgcgtgggaaagtactcgacctc
ctgcgacccgacgacaatggtaagctacaatctcttctgtctgttgaaatttttggcgtt
attcgctctttagctcaatttcgcctcacgggagcgcaaaaagattacattgttgtcggc
tctgattccggccgcatcgtgatccttgaatacaacaaggagaagaacgcatttgataaa
atccatcaggaaacttttggaaaatctgggtgccgtaggattgtccctggtcagtatttg
gccattgaccctaagggtagagctgtaatgattggtgcttgcgagaagcagaagcttgtt
tatgttttgaatagggatacggtagctaggttgactatttcatctcctctagaggcgcat
aagagccacactatttgttattccgtttgtggtgtggattgtgggtttgaaaacccaatc
tttgcagctatagagttggattatgccgaggctgaccaggaccccactggtcaagcagcc
aatgaggcgcagaagcagttgaccttttatgaattggatttgggtcttaaccatgtttcg
aggaaatggtctgaacaggtcgataatggtgctaatatgcttgtcaccgtgcctggtggt
ggggatgggccgagtggtgttcttgtatgtgctgagaattttgtcatatataagaatcaa
gggcatccagatgtccgagcagttattccgagacgcgaggacttaccggctgagcgtggg
gttttgatcgtctcagctgctatgcataagcaaaaatccatgtttttcttcctcttgcaa
actgagtatggggatatgtttaaagtgacactggaccatgagaatgacagagtaaaagag
ttgaagataaaatattttgatactattcctgtcacatcatctttgtgcgtcttgaagtca
gggtttctatttgctgcatctgagtttgggaaccatgccttgtatcagtttcaggcgata
ggagatgagccagatgtggaggcctcatcagctacactgatggaaacagaagaaggtttt
cagccagtgtttttccagcctagaaaactgaagaatctacttaggatagaccaaattgag
agtctgatgccaatgatggatatgaaagtcactaatctatttgaggaagaaacgcctcag
atattctcactttgtgggcggggtcctcgttcatcactccgtgtgttgagacctggtttg
gctattagtgaaatggcagtttcacagttacctggtgttccaagtgctgtgtggactgtc
aaaaagaatgtcaatgatgaatttgatgcctatattgttgtttcttttgcaaatgccact
ctcgtgctttccattggtgagactgttgaagaagtgagcgacagcgggtttcttgatacg
acgccttctcttgctgtttctttgattggcgacgattccttgatgcaagtgcatcccagt
ggtatcaggcatataagggaagatgggcgtattaatgagtggagaactccaggaaagaga
accattgttaaggttgggtctaacagacttcaggttgtcattgcactgagtggaggcgaa
attatatattttgaagttgatatgactggtcagctgatggaggttgagaagcatgaaatg
tcaggagatgttgcctgtttggatatttctcctatccctgaaggaagacaaagatcacgg
tttcttgctgttggatcttatgataacactattcgcattttgtctttggatcctgatgac
tgtatgcagatactaagtctgcaaagtgtttcatcacctccggaatctctcctatttctt
gaagttcaggcttctactggaggtgatgatggggctgaccaccctgcaagcctttttttg
aatgctggtctacaaaatggagttttattcaggacggtagtggatatggtgaccggacag
ctatcagatgcccgatctcggttcctaggactcagagcaccaaagctgttttctattatt
gtgagaggacggagagctatgctttgcttgtcaagtagaccttggcttggttatatacac
caaggacatttccttctcacaccattgtcatatgagactcttgaatatgctgcttcattt
tcatcggatcagtgtgccgaaggtgttgttgctgtcgctggggatgcattgaggattttt
actattgaaagacttggagaatcttttaatgaaacagccatacctttgaggtatactcct
aggaaatttgtggttcaacccaaaaagaagctgttggtaataattgagagcgatcaggga
gcattcacagcagaagagcgcgaagctgcaaaaaaggagtcctttgagtcttctggagtg
ggggaaaacggaaacatagtgcagatggagaatggtgatgatgaggaaaacaatgatccg
ctttctgatgagcagtatggatatccaaaggcagaatctggaaagtgggtttcttgcatt
agagttctggatcctaggtcagctttaacaacctgtctgctagagcttcaggataatgaa
gctgcgttcagcatgtgctctgtgaatttccacgataaggagtatggtacacttttggct
gttgggacagcaaaaggtcttcagttttggcccaaaagatccttcgaggctggatatatt
cacatatataggtttaaagaagatggaaaagtccttgagcttttgcacaagacacaagtg
gacggtgtacctctcgcattatgccaattccagggaagattgcttgctgggattggtcct
gtacttagattgtatgatttagggaaaaggaggttgcttagaaagtgtgagaataaatta
ttccccaacacaatcacttccatccaaacctatcgcgatcgaatttatgttggggacatg
caagagtcgtttcactactgcaagtacagacgtgatgagaatcagttatatatatttgct
gatgacactgttccaagatggcttactgctgctcagcatattgacttcgacaccgtggct
ggttccgacaaatttggaaatatctactttgtccgattgccacaggatgtgtcagatgag
attgaagaagaccccactggtggtaagataaagtgggagcaggggaagttgaatggagca
ccgaacaaagtagaggaaatagttcaatttcacattggtgatgtggtcacttgcttgcag
aaagcatccctgattcccggagggggagagtgcatcatctatgggactgtgatgggtggt
ttgggggcattacttccatttacatcacgtgatgatgttgacttcttctctcatctggag
atgcacatgcggcaagaacacccacctttgtgtggcagagaccatattgcctacagatca
tcctattttcctgtgaaggatgttatagatggagatttgtgcgaacaatttccaacattg
cccatggatatgcagcgtaaaattgctgatgagctggatagaactccaggggagatttta
aagaaactggaagaaataagaaataagatcatttaa
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