Henckelia pumila: 140880193
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Entry
140880193 CDS
T11037
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
hpum Henckelia pumila
Pathway
hpum03015
mRNA surveillance pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140880193
09123 Folding, sorting and degradation
03018 RNA degradation
140880193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140880193
03041 Spliceosome [BR:
hpum03041
]
140880193
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140880193
mRNA cycle factors
Stress granule specific factors
140880193
Spliceosome [BR:
hpum03041
]
Complex C
Other components
Complex C specific factors
140880193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
RRM_MARF1
PABC_AtC3H46
GH97_C
Motif
Other DBs
NCBI-GeneID:
140880193
NCBI-ProteinID:
XP_073140509
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All DBs
Position
2:2573942..2578645
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AA seq
642 aa
AA seq
DB search
MAAQVQMQPPVQLVNAAPATGAPFVTSLYVGDLDANVTDSQLYDLFSQVGDVVSVRVCRD
LTSRHSLGYGYVNYGSHQDAERAVEELNFTPLNGKPIRIMYSHRDPSTRRSGAGNIFIKN
LDKEIDHKALHDTFSSFGNILSCKIVTNASGHSMGYGFVQYASDESAQKAIEKLNGMLLN
GKQVYVGPFLRKQEREMSVDKTVFTNVFVKNLSESTTEEDLRKIFGEFGSLTSTVVMRNE
DGKSKGFGFVNFENADDAARAVESLNGHKFDNKEWYVGRAQKKSEREVELKQQFEQTTQE
AVDKYQGLNLYVKNLDDSVVDDKLKELFSPFGSITSCKVMRDPKGTSRGSGFVAFSSPEE
ASKALSEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPMAMASTVNPRMPMYPPGG
PGLGQQIFYGQPPPAIIPPQHGFGYQQQLVPGMRPGAPLMPNMFVPLVQQGHQGPRPGGR
RVNAIPMQQGPQPIMQQQMLPRGRGFRYPFGRGMPDVSMQGMPGNMLPVPYEMGGLPLHN
AGISQPIPIGALASALANASPIEQRTMLGENLYPLVEQLEPDTAAKVTGMLLEMDQTEVL
HLLESPEALKAKVAEAMDVLRNVSQQQSSNPADQLASLSLNE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggttcagatgcaacctccagtgcagttggtgaacgccgcaccggccacc
ggtgctccgtttgtgacttcactgtacgtcggagatctcgatgcgaacgtgaccgactcg
cagctgtacgatctattcagccaggtgggtgatgtggtttcggttagggtttgcagggat
ttgaccagccgacattcactcggttatggctacgtcaactacgggagtcatcaggatgct
gagagagctgtggaggagctgaactttactccgctcaatgggaaacccattaggattatg
tattctcatcgagaccccagtacacgcaggagtggggctgggaatatatttattaagaat
ttggacaaggaaattgaccataaagctctacatgatacattttcttcatttgggaacatt
ctgtcgtgcaaaatagtaacaaatgcgtctggtcattccatgggctatggttttgtgcaa
tatgcaagtgatgaatctgcccagaaagctattgagaagcttaatggcatgctgttgaat
ggaaagcaagtctatgttggacccttccttcgtaagcaagaaagagagatgtcagttgac
aagacagtattcaccaatgtgtttgtgaaaaatctttctgaatcaacaactgaagaagac
cttagaaagatatttggtgaatttggatcactcactagtactgtggtaatgagaaatgaa
gatggcaagtctaagggctttggatttgttaattttgagaatgcagatgatgctgctcga
gcagttgaatccctaaatggtcataaatttgataacaaagaatggtatgttgggagagcc
caaaagaaatcagagagggaggttgaattgaagcaacaatttgagcagactacacaagaa
gccgttgacaaatatcaaggattgaacctgtatgtcaaaaaccttgatgatagtgttgtt
gatgataagctcaaggaattgttctctccatttggttcaataacatcatgcaaggtgatg
cgagatcccaaaggtacaagcagaggatcaggctttgttgcattctcatcacctgaagag
gcttccaaagctctttctgaaatgaatggtaagatgattgctggcaaaccactttatgtt
gcccttgctcagaggaaggaagagagaagagcacgtttacaggctcagttttctcaaatg
aggcccatggctatggcatctactgtcaatcctcgtatgcctatgtaccctcctggtggt
cctggtttagggcaacaaatattttatgggcaaccaccacctgccattattccccctcaa
catgggtttggttatcagcagcaacttgttcctggtatgagacctggtgcgcctctcatg
ccaaatatgtttgtgcctcttgttcaacaagggcatcaaggtccacggcctggtggtagg
cgtgtcaatgctattccaatgcagcaaggccctcaaccaattatgcagcagcagatgctt
cctaggggacggggctttcgttatccttttggccgtggcatgcctgatgtttccatgcaa
ggtatgcctggaaatatgcttcctgtcccatatgaaatgggtggtttgccattgcataat
gcaggaatatctcaaccaattcctattggagctttggcatctgcacttgcaaacgcatct
cccatcgagcaaaggactatgttgggagaaaatttgtatccgctggttgaacaacttgag
cctgatacggctgctaaggtgaccggcatgcttctggaaatggatcagacagaggtcttg
cacttgttggagtctccagaagctcttaaagctaaggttgcagaggcaatggatgttttg
agaaatgtgtctcagcagcagtcgagcaaccccgctgaccagttggcttctctgtcactg
aatgaatga
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