Henckelia pumila: 140880372
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Entry
140880372 CDS
T11037
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
hpum Henckelia pumila
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140880372
03036 Chromosome and associated proteins [BR:
hpum03036
]
140880372
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
140880372
Chromosome and associated proteins [BR:
hpum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
140880372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
Tex_central_region
HHH_9
HHH_3
OB_PDCD11
Tex_N
S1
Motif
Other DBs
NCBI-GeneID:
140880372
NCBI-ProteinID:
XP_073140843
LinkDB
All DBs
Position
2:complement(113716663..113724900)
Genome browser
AA seq
1533 aa
AA seq
DB search
MAGNTVISDDEDEIGVEEEEVDEEPYGDRARDDEDDEDDEDDEGHDEYEKDGFIVDDVEE
EEGEEEENRADSDEERQKKKKRKKRDSERNYVLDEDDYELLQESNISVPRPKLENKKFKR
LKKARRDVEEGSSGFSDEEEFDGNGIGVRTAEEKLKRSLFGDDDGQPLEDIAEEDLQGEE
EEDVDIGEEEDEMADFIVDEEEVDEHGAPVRRKKPKKSRQRPGITSHALQEAHEIFGDVE
DLLRIRKLEVRDRYGETGERNLEDQFDPSVLSEKYMTEKDDRIREIDIPERMQIYEESTG
QPAIDELSVELEREWIFNQLVGGVGPFMNKRGSAAEDLNEVKNHIARFLELMHGQKLDIP
FIAMYRKEEIFSLLQEPDEPEADIQNDPNWRPTLKWHKVLWTIHDLDKKWLLLQKRKSAL
QLHYNKRFEEESRRVYDETRLTLNQQLFESVSKLLKAADSERELDDVDSKFNLHFPPCEV
VLDEGQFKRPKRKSQYSICSKAGLWEVANKFGYSSEQFGLQISLEKMRMDELEDAKETPE
EMASNFTCAMFETSQAVLKGARHMAAVEISCEPCVRRHVRSIFMENAVVSTSPTSDGNMA
IDSFHQFSGVKWLRDKPLTRFEDASWLLVQKAEEEKLLQVTIKLPEVVLDKLISDSNDYY
LSDGVSRSAQLWNEQRKLILHDAFYNFLLPSMEKEARSLLTTRAKTWLLWQFGKLLWDKV
SVAPFQRKENDVNTDEEAAPRVMACCWGPGKPATTFVMLDAAGEILDVLNAPSLSLSNQN
ANAQQRKRNDQQRVQKFMMDHQPHVVSLGAANLSCTRLKEDIYEIIFKMVEDNPRDVGHD
MDNLNIFYGDESLPHLYENSRISVDQLPSQEGIIRRAVALGRSLQNPLAMVATLCGPGRE
ILSWKLHPLENFLTPDEKYGMFEQVMVDVTNQVGLDINLASSHEWLFAPLQFISGLGPRK
AASLQRSLVRAGAIFTRKDLLTHHGLGKKVFINAVGFLRVRRSGLTSSSTQFIDLLDDTR
IHPEFYGLAQELAKDIYREDVNDDVNDDDDMLEMAIEHVREKPQLLRAVDVHEYADQKNR
LNRKETLNDIRLELIEGFQDRRRPYMEPSQDDEFYMISGETEETLSEGRIVQATVRRIQP
QRAICVLESGLTGMLSKEDCADDWRDINELSDKLHEGDIITCKIKSIQKNRYQVFLTCRE
SEMRNNRLQNHRSMDPYYHEERSTTHTEQEKARKEKELGKKHFKPRMIVHPRFQNITADE
AVEFLSDKVPGESVIRPNARGPSYLTLTLKIYDGVYANKDIVEGGKELKDITSVLRIGKT
LKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRRGTKYEVDELLRIEKSENPMRIVY
CFGISHEHPGTFILTYVRGSNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLD
SAPSIRSVAAMVPMRSPATGGSSGFGGGWGGSAQGDEWRGGQSTDKDRTSRTGRGEYKNG
GGQEGHPSGAPRPYGNRGRMRERDSYGGSRGDR
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaacacagttatctccgacgacgaagatgagattggtgttgaggaagaagaa
gttgatgaagagccttacggagaccgagcccgtgacgacgaagacgatgaggatgatgaa
gacgacgaaggacatgatgaatatgagaaagatgggttcattgtggatgacgttgaggaa
gaagagggggaggaagaagaaaacagagctgatagtgatgaggagaggcaaaagaagaag
aaaaggaagaaaagggactctgagaggaactatgtgcttgatgaagatgattatgaactt
cttcaggagagcaacatctccgttcctcgcccaaaacttgaaaataagaagttcaaacga
ttgaagaaggctcggagagatgtggaagaaggttcgtctgggttttctgatgaagaggag
ttcgatggaaatggaataggagtgcgtacagctgaggagaagctcaaacgtagcttgttt
ggtgatgacgatggacaacctcttgaggatattgccgaggaggatttgcagggagaagag
gaggaggatgtagacattggtgaagaagaagatgaaatggctgattttattgtcgatgaa
gaagaagttgatgaacacggagctcctgtgaggaggaagaagccgaaaaagagcaggcaa
cggcctggtataacatcacatgcactccaagaagcacatgaaatatttggagatgttgaa
gatcttctgaggatacgcaaattggaagtgagagacagatatggtgaaactggtgaaaga
aacctcgaagatcaattcgatcccagtgttctttctgagaagtatatgactgaaaaggat
gatcgaattagagaaatagacattcctgaaagaatgcagatatatgaggaaagtaccggc
cagcctgcaatagatgagctgagcgttgagttggagagagagtggatatttaatcagctt
gtcgggggtgtagggcctttcatgaacaaaagaggttctgcagctgaagatttaaatgaa
gtcaagaaccatattgcaagatttttggaattaatgcatggtcagaagttagatatacca
ttcattgctatgtaccggaaagaggagattttcagcctgttgcaagaaccagatgagcct
gaagctgacattcaaaatgaccctaactggagaccaacactaaaatggcacaaggtgctt
tggacaatccatgacttggataagaagtggcttcttcttcagaaaagaaagagtgcacta
cagttacactacaataagcgattcgaggaagagtcacgaagagtatatgatgagacacgg
ctcactctaaaccaacaactctttgaatcagtttccaagttactcaaagctgctgattca
gaaagagaattggatgacgttgactctaaatttaatttgcacttccctccttgtgaagtt
gtcctagatgaagggcagtttaaaagaccaaagaggaagtcacagtacagcatttgcagt
aaagctggcttatgggaggttgcaaacaagtttggttacagttctgagcagtttggattg
cagatctctttggagaaaatgagaatggatgaattagaagatgcaaaggaaacacctgaa
gaaatggcctctaattttacgtgtgctatgtttgaaacatctcaagctgttctcaaaggt
gcaaggcatatggcagctgttgagattagctgtgagccatgtgtccggaggcatgtccgt
agcatctttatggaaaatgctgtagtgtcaaccagtcctacatctgatgggaacatggct
attgattcttttcaccagttttctggagtgaagtggttacgagacaagccacttacgaga
ttcgaggatgcatcttggctcttagttcagaaggctgaagaggagaagctccttcaagta
accatcaagctaccagaagtagttctcgataaattgataagcgactcaaacgattattat
ctaagtgacggagttagcagatccgctcaattatggaatgaacagagaaaattaattctt
catgatgcgttttacaattttcttctaccttcaatggaaaaggaagctagatcacttctg
actactagagcaaaaacctggttgctatggcaatttggaaagctcttgtgggacaaagtt
tccgtggcaccatttcagcgaaaagaaaatgatgtcaatacagacgaagaagcagcaccc
agggtcatggcttgctgctggggccctggtaagccagctacaacttttgtgatgctggat
gcagctggagagattttagatgtgctgaacgctccatcactcagtcttagcaatcagaat
gctaatgctcagcagcgtaagagaaatgatcaacagcgtgtgcagaaatttatgatggac
caccaaccacatgttgtctctctaggggcagctaatttgtcttgtactcggctgaaggaa
gatatttatgagattatattcaaaatggtggaggataatccgagagatgttggtcacgat
atggataatctgaatattttctatggtgatgaatctcttccgcacttatatgaaaattcc
cgcatatctgtggatcagcttccctcccaggaaggtatcatcagacgtgctgtggctctg
ggacgctctcttcagaatccattagccatggttgcaacattatgtgggccaggtagggag
atattatcttggaaactgcatcctctggaaaattttctgacccccgatgagaagtatggg
atgtttgaacaagttatggtggatgtaactaaccaagttggtcttgacattaacttggct
tccagtcacgaatggttgtttgctcctctgcagtttatttctgggcttggacccagaaaa
gcagcttctctccaaagatctttagtaagagctggagccattttcactaggaaagacctg
ttgacacatcatggtcttggtaaaaaggttttcattaatgcagttggattccttcgagta
cgccgtagcggattgacttctagtagtactcaatttattgatttgttagatgatacaaga
attcatccagagttttacggccttgctcaagaactggccaaagatatttaccgggaggat
gtcaacgatgatgtcaatgatgatgatgatatgctcgaaatggccattgaacatgtcagg
gaaaagcctcagttattgagggctgttgatgttcatgaatatgccgatcagaaaaaccgt
ttgaaccgaaaagaaaccctcaatgatataagattggagttaattgaaggattccaagat
cgtcgcagaccatatatggaaccaagtcaggatgatgaattttatatgatttcaggagaa
actgaagaaactttatcagaaggaagaatcgtacaagcgacagtgcgaaggattcaacct
caaagagccatttgtgtccttgaatctggattgactggcatgcttagcaaggaagattgt
gctgatgattggcgagatattaatgaattatctgataaactccatgaaggtgatattata
acatgcaaaatcaaatcaattcaaaagaatcgttatcaggtgttcttaacttgtagagaa
agtgaaatgaggaataatcgcttacagaaccatcgaagtatggatccttactatcatgaa
gaacgcagcaccacacacactgagcaggaaaaagctcgtaaagaaaaggagcttggaaaa
aagcattttaagccaaggatgattgtccatcctcgattccaaaatattactgctgatgag
gcagtagagtttctttcagacaaggttcctggtgaaagcgtcatccgtccaaacgctcgt
ggtccttcatatttgactctaacattaaaaatctatgatggggtttatgcaaacaaggac
atagttgaaggtggaaaggaacttaaggatattacgagtgttcttcgaataggtaaaaca
ttgaaaattggagaggacacctttgaggatcttgatgaggtaatggatcgttacgtggat
ccattggtagctcatttgaaggcaatgcttaattacagaaagtttaggaggggcactaag
tatgaagtcgatgagctccttagaattgagaaatctgagaatccaatgagaatcgtctat
tgctttggtatatcccatgaacatcctggcacatttatcctaacttacgtcagaggttca
aatccacatcacgaatacataggtctctatccgaagggatttaaattccggaagcgaatg
ttcgaagacatagaccgtcttgtggcatattttcagaggcacattgatgatccgcttgat
tctgcaccatcaattcgatctgtcgctgctatggttccaatgagaagtcctgcaactggc
ggctcatcaggttttggtggcggttggggtggttcagcacagggtgacgagtggagaggt
ggccaatctacggacaaagataggacttctcgaacggggagaggtgagtataaaaatggt
ggtgggcaggagggtcaccccagcggggctcctagaccgtatggtaaccgaggacgtatg
cgtgagcgagactcctatggtggtagcaggggagacaggtag
DBGET
integrated database retrieval system
