Henckelia pumila: 140881243
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Entry
140881243 CDS
T11037
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140881243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hpum03041
]
140881243
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140881243
Spliceosome [BR:
hpum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140881243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
AAA_30
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
140881243
NCBI-ProteinID:
XP_073142498
LinkDB
All DBs
Position
2:complement(87986886..88016666)
Genome browser
AA seq
1043 aa
AA seq
DB search
MDDLRTWVSDKLISLLGYSQPTVVQYVITLSKKASSPSEIVNQLADLGMSSSAEISLFAK
DIFARVEHKNSGPNLYQQSEVEAAMLARKQKTYKLLEADDEEDDMVPVAYRPKKEDTRSK
KFRKRSDLHDDTDDEVVRKGSQDRKVRKRTSHDDDDSESEEQRLRDQREREELEQHIKER
DAAGTRKLTDQKLSKKGEEEAIRRSKALEDDGIGTLRKVSRQEYLKKREQKKLEELRDDI
EDEQYLFEGVKLTEVEKRELRYKKEIYELVKKRTEESDDTNEVYKIPEAYDMEGGVNQEK
RFAVAMQRYRDPTAEEKMNPFAEQEAWEEHQIGKATLKFGSKNRKEKHNDFDFVFEDQIE
FIQAAVMDGVNVEQDSIELIEASAAKSAFEKLQNDRKTLPIYPYREELLKAVRDHQVLVI
VGETGSGKTTQIPQYLHEAGYSERGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI
RFEDCTSEKTIIKYMTDGMLLREFLGEPDLESYSVVMVDEAHERTLSTDILFGLVKDIAR
FRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEADYLDAAVVTALQ
IHVTQPPGDGDILIFLTGQEEIEMAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKI
FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMEALLVTPISKASA
NQRAGRSGRTGPGKCFRLYTAYNYHNDLDDNTIPEIQRTNLANVVLSLKSLGISDLLNFD
FMDPPPSEALLKALELLYALSAVNKHGELTKAGRRMAEFPLDPMQSKMIVASDKYQCSDE
IISIAAMLSIGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYNSWKETNFSTQWC
YENYIQVRSMKRARDIRDQLEGLLERVEIELTTNSNDLDSIKKAITSGFFPHSARLQKNG
SYRTVKHPQTVQIHPSSGLAQVRPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQ
LKDVEDVGSKKMPRGEGLASTNG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttgaggacatgggtgtctgacaaattgatttcacttctgggatattcgcag
ccaactgtagttcaatatgtgataacactgtctaagaaagcttcatcaccctctgagata
gtaaatcaactggcagatttgggaatgtcatcctctgcggagatatctttgtttgctaaa
gatatttttgccagagttgagcataagaattcaggaccaaatttatatcaacaaagcgaa
gtggaggctgcaatgcttgcccgaaaacaaaagacctataaactgttggaggctgatgat
gaggaggatgatatggttcccgtggcttaccgtcccaaaaaggaagatacaagaagtaaa
aagttcagaaagaggagtgaccttcacgatgatacagatgatgaggttgtcagaaaaggg
agccaagatagaaaagtacgaaagcgaacttcccatgatgatgatgattctgagtcagaa
gaacaaagactacgtgatcaaagggaaagggaggagttggagcagcatatcaaggaacgc
gacgcagcagggactaggaagttgactgatcaaaagctttcgaagaaaggggaagaagag
gcaattcggagatctaaggcgttggaggatgatggcattgggacattgaggaaagtgtcc
agacaagagtatttgaaaaaacgagaacaaaagaaattagaggaactcagagatgatatt
gaggatgaacaatatttatttgagggagtcaaactgactgaggttgaaaaacgtgagcta
aggtataagaaagagatatacgagcttgttaaaaaacggacggaagaatctgatgacaca
aatgaggtgtataaaatccctgaagcatatgacatggaaggtggtgtaaatcaagagaag
aggtttgctgtggccatgcagcgatatagggatcctactgcggaggagaagatgaacccc
tttgctgagcaagaagcgtgggaggagcatcagattggaaaagcaactcttaaatttgga
tctaaaaatagaaaggaaaagcacaatgattttgattttgtctttgaagaccaaatagag
ttcatacaagcagcagttatggatggtgtgaatgttgagcaagactccattgagttgatc
gaggcatctgctgccaaatcagcttttgaaaaacttcagaatgacagaaaaacgctgcca
atctatccctatagggaagagttgctcaaggctgttcgtgatcaccaggttcttgtcatt
gttggagaaactggttcaggaaagactacgcagatacctcaatacctacacgaggcagga
tatagcgagcgtggaaaaattggatgtacccagccacgccgtgttgcagcaatgagtgtt
gctgctcgagtttctcaagaaatgggagtaaaacttgggcatgaggttggttattctatt
cgttttgaagactgtacttctgaaaagacaattattaagtacatgacggatggaatgcta
ttacgtgaatttcttggagagcctgaccttgaaagttacagtgtggtgatggtagatgaa
gcccatgaaagaacactttccaccgacattctttttggcttagttaaggacattgctcgg
ttccgccctgacctcaaattactcatttcaagcgccactcttgatgccgaaaagttcagt
gattacttcgactctgcaccaatttttaaaatacctggaagaagatttcctgttgaaata
cactatactaaggcacctgaagctgattacttggatgctgcagtagttactgctcttcaa
atccatgtgacacagccaccaggagatggtgacatacttattttccttactgggcaggag
gagattgagatggccgaagagattcttaagcataggactagaggattggggacaaaaata
gcggagctcatcatatgcccaatttacgcaaacttgccaacagagctacaagctaagata
tttgaacccactcctgaaggggcacggaaagtcgtcctagcaacgaatattgctgaaaca
tcattgacgatagatgggatcaagtatgtaattgatccaggattttgcaagatgaagtcg
tataaccctcggactggaatggaagcactcctggtcactcctatatcaaaagcatcagct
aatcaacgagcaggtcgatcgggaaggacagggccaggaaaatgctttcggttgtatact
gcttataattatcataacgatttagacgataataccatccccgaaatacaaaggaccaac
ttagccaacgtagtcctcagtctaaagagccttggcatcagcgatctattgaattttgac
ttcatggatcctccaccatctgaagctttactgaaggcgttggagttgctttatgcttta
agtgcagttaacaaacatggcgagttgacaaaagcgggtagaaggatggccgagttcccc
ctagatcctatgcagtcaaagatgattgttgcttctgataaataccagtgttctgatgaa
atcatctctattgctgctatgctatccattggaaattctatcttttatcgtcccaaggat
aagcaagttcatgcggacaatgctcgcttgaactttcacatgggaaatgtcggagatcat
atagccttgctcaaggtttataactcgtggaaggaaaccaatttttcaactcaatggtgc
tatgaaaattatattcaagtcaggagcatgaagagagctagagatatacgggatcaactg
gaggggctgcttgaaagggttgagattgagttgaccacaaattccaatgacttagattct
ataaagaaagccataacttccggattcttcccccactcagcgaggctacagaagaatgga
tcctatagaactgtgaaacatccgcagactgttcaaattcaccctagctcaggtttagct
caggtgcgaccaagatgggtcatctatcatgaactagttttgacaactaaggagtatatg
cgacaggtgaccgaactaaaaccagactggcttgttgaaatagctcctcattactatcag
ttgaaggatgtggaagatgtgggatcaaagaaaatgcctcgtggtgagggcctagcatca
acaaatggttga
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