Henckelia pumila: 140881535
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Entry
140881535 CDS
T11037
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
hpum Henckelia pumila
Pathway
hpum03013
Nucleocytoplasmic transport
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140881535
09122 Translation
03013 Nucleocytoplasmic transport
140881535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140881535
03041 Spliceosome [BR:
hpum03041
]
140881535
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
140881535
Spliceosome [BR:
hpum03041
]
Complex C
Other components
EJC/TREX
140881535
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140881535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
140881535
NCBI-ProteinID:
XP_073143020
LinkDB
All DBs
Position
2:complement(191822542..191855670)
Genome browser
AA seq
1813 aa
AA seq
DB search
MSLPSLECIFFTEDSIRELKNSNSNFKFPSPAPVLRFLYELCWTVVRGDLPLQKCKMALE
AVEFSDCGPEGDVGSYFADVVSQMAQDLSMLGDYRSRLIKLAKWLVESTLVPLRFFQERC
EEEFLGESEMIKIKASDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQVPKAS
TENAAAATIGIIKSLIGHFDLDPNRVFDIVLECFELQLDNNVFLDLVPMFPKSHASQILG
FKFQYYQHMEANNFVPNGLYQLTALLVKKDFIDVDSIYAHLLPKDEEAFEQYNTFSVKRL
DEANKIGKINLAATGKDLMDDEKQGDVTVDLFTALDMEKMAVAERSSELANNQALGLLMG
FLAVDDWFHAHQLLERLSPLNPVEHDQICQGLFRLIEKPVFSAYKVVRQMKLSICEASYG
AGVDSEAANSYLNKPFINLPKELFEMLASAGPYLYRDTLLLQKTTRVLRAYFLCALELVS
DADGEFCTRTVSFEKLNPRLHLKDARLKIEEALGTCLLPSLQLIPANPAIGQEIWELMSL
LPYEARYRLYGEWEKDDERFPMVLAARQTARLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLAQGGREKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGHGIELVLIQELIQQMANVQYTEN
MTEEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDALLPKEENKLAIPLLLLIAQ
HRSVVVIKADVPYIKMVSEQFDRCHGTLLQYVEFLCSAVAPASSYALLIPTLDELVQKYH
LDPEVAFLVYRPVMRLFRCQNTSSSFWPLDCNEALNPATTEKETEASDSSTKLVLDVGSS
LKPFSWLNLLDTIRTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEITKQHAALK
ALEELSDNSSSAIAKRKKDKERIQESLDRLIMELQKHEEHVKSVQRRLSHEKDTWLSSCP
DTLKINMEFLQRCVFPRCTFSMPDAVYCAIFVNTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEVGRLGRFLFETLRTAYHWKSDETVYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNSLIMLTKISSVFPVTRKSGINLEKRVAKIKN
DDREDLKVLATGVSAALAARKPSWVTDEEFGMGYLDIKPAPAPSTKLLSGNATTVQNGTG
NLSQIEQIGGRAVSAGNSHLDSGNSAKDLRRHDAGTSNTVDVLKQVEESASKHLEETTKV
NNKSSMDPEVRPLVKRSVTAGSLGKQPKHDLIKDDGKSGKVLGKTSGNANMSAASAKGTN
TSTRSSDPHIETKPDIVNSKLSDSRVSGGKDDDIESTEVHKQPMSWSIHSPRQENNLKSE
KPLKRLSPAEEHDRLNKRRKGESDVRDLDGSDIRILEKERPSDARSADKLQPITFEKAVS
DELSSSRVMDKPVDRSKDKNSERYDRDYKDRLERPEKSRGDDLLSEKLRDRSLERHGRER
SLEKVQEKGTDRNFDRLGKDDKNKDERSKVRYSEASGDKSHVDDRFLGQSLPPPPPLPPH
VIPHSVNANRRDEDADRRFGNARHPQKLSPRHEDRERRRSEENTLLIPDDSKRRREDEFR
DRKRDERDASTTKVDDRERDKTNINKDDMDSTSKRRKLKREHILSEPGEFLPALAPTPPP
LSINLSQTHDGRDRGDHKGVMVQRPGYIDESGMRIHGKEAVSKTTRRDIDLMYDRDWDED
KRQRVEPKRRHRK
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgccttctctcgagtgcatattcttcaccgaagactccattagagagctgaag
aattcgaattcgaatttcaagtttccttccccagctccagtgcttcgctttctttatgaa
ctctgctggacagtggttcgaggggacttgcccttacagaaatgtaaaatggctttggag
gctgttgaattttcagattgtggtcctgaaggggatgtgggatcatattttgctgatgtt
gtatcccaaatggctcaagatctttctatgcttggtgattaccgttctcgccttataaaa
ctggcaaaatggctggtggaatctacccttgttccattgaggttttttcaagagcgctgt
gaggaagaatttttgggggagtctgaaatgatcaagataaaggcttcagatctcaagtca
aaagaggttcgagttaatactcgtcttctataccaacaaactaagtttaatttgctccga
gaagaaagcgagggctatgctaagctggtcaccctcctctgtcaggttcctaaagcatca
actgagaatgcagcagctgcaacgattggcattattaagtcattgattggtcactttgat
ctcgatccaaatcgagttttcgacatagtgttggaatgcttcgagcttcagcttgataac
aatgtttttttggacttagttccgatgtttccgaagtcccatgcttcacaaattcttggg
ttcaagtttcaatattatcagcacatggaagctaataattttgtaccaaatggactctat
caacttacagcattgttggtgaagaaagacttcattgatgttgatagcatatatgcccat
ttacttcccaaggacgaagaggcatttgagcaatataatactttttcagtgaagagactt
gatgaggccaataaaattgggaaaattaaccttgcggccactggaaaggacctcatggac
gacgagaaacaaggagatgtgactgtagatctttttactgctttagacatggaaaaaatg
gcagttgctgaaagatcctcagagcttgcaaataatcaagccctgggtctattgatgggc
ttccttgctgtagatgattggtttcatgctcatcagctactggagcgtctctcacctctc
aatccagtggaacatgatcaaatttgtcaggggttgtttcggcttattgaaaaaccagtt
ttttctgcttacaaagtcgtgcgccaaatgaaactttcaatttgtgaggcatcatatggt
gctggtgttgattcagaggcagcaaattcatacctcaataaacccttcatcaatctacct
aaagagctgtttgagatgcttgcttctgctggaccttatctttaccgtgacacattatta
ctgcagaagacaaccagagtgttgagagcttattttctttgtgcccttgagcttgtcagc
gatgccgatggggaattttgtactcgtactgtttcattcgaaaaattgaatcctcgcctt
caccttaaagatgcaagattaaaaattgaggaagcacttggaacatgtcttcttccttcg
ttgcagttgattcctgctaatcctgcaattggacaggagatatgggaactaatgtccctt
cttccgtacgaggcgcgataccgtttgtatggtgaatgggaaaaggatgacgagcgtttt
ccaatggttttggcagcgaggcaaacagcaaggttggatactcgaaggattttgaaacgt
cttgccaaagaaaatttaaagcagcttggtagaatggttgccaaactagctcatgcaaat
ccaatgactgtgcttcgaacaattgttcatcagattgaggcatacagggatatgattgct
ccagttgtggatgctttcaagtatttgactcagcttgagtatgacatcttggagtatgtt
gtcattgaacgcttggctcaaggaggtcgcgagaagcttaaagacgatggccttaatttg
tcagattggctccagtctcttgcatcattttggggtcacttgtgtaaaaaatatccatca
atggaacttcggggtcttttccagtatcttgtaaatcagttgaaaaagggacatggaatt
gagcttgttctcattcaggagctgatacaacagatggcaaatgtccagtatactgaaaat
atgacagaagaacaattggatgccatggctggaagtgacactctccgatatcaggctact
tcatttggcattacgaggaacaacaaggctttgatcaagtctactaacagactcagagat
gctttgctcccgaaggaagaaaacaaattggcgattccccttttgctactcattgcccag
catcgttctgtggttgtcataaaagcagacgtgccctacatcaaaatggtcagtgaacag
tttgatagatgtcatgggacactgcttcagtatgtggaatttctttgtagtgcggtggct
cctgcatcaagttatgctttgctgattcccactcttgatgaacttgtacagaaatatcat
cttgatcctgaggtggcctttttggtatatcgtccggtgatgagactctttaggtgtcaa
aatacttccagttccttctggccattagactgtaatgaagcactgaaccctgctactaca
gaaaaggagacagaggcttcagattcatccaccaaattggttctagatgttggatcttct
ctgaagcctttctcatggcttaatcttcttgatacaatcagaacaatgttgccctcaaaa
gcatggaatagcttgtctcctgatttgtatgcaacattttggggtctcactctctatgat
ctccatgtacccagaagtcgttatgaatctgagattacaaagcagcatgctgctcttaaa
gctctcgaagaactttctgataattccagttctgcaattgctaaaaggaagaaagataaa
gaaagaattcaggagtctctagatcgattgattatggagctccaaaagcatgaagaacat
gtcaagtctgtacagcgaaggctttctcacgagaaggatacatggttgagttcttgtcct
gatactttaaaaatcaacatggaatttctgcagcgctgtgtttttccccgttgtacattc
agtatgccagatgctgtatactgcgcaatttttgtaaatacgctccattccttgggaaca
ccattcttcaacacagttaaccatatagacgttctgatctgtaaaaccttgcaaccaatg
atatgctgctgcactgagtatgaagtgggtcgacttgggaggtttctatttgagacgctg
agaactgcttatcattggaagagtgatgaaacagtttatgaaagagaatgtggaaacatg
ccagggtttgctgtttattacagatatccgaacagccaacgcgtcacatatggccaattt
atcaaggtgcactggaagtggagccagagaatcactagactacttattcagtgcttggaa
tcaacagagtacatggagattcgcaattctcttattatgctgactaaaatatccagtgtt
tttcctgttactcggaagagcggtatcaaccttgaaaagcgggtggctaaaattaaaaat
gatgacagagaggatctcaaagttttggccaccggtgtttctgcagctttggctgctaga
aagccttcatgggtgacagatgaagaatttggcatgggttatctggacataaagcctgct
ccagcaccttcaacgaagcttttatcaggtaatgctacaactgtgcaaaatggtactgga
aacctttctcaaatcgagcaaattgggggtagagcagtttctgcaggaaactcacattta
gattccgggaattctgccaaagacttgagaagacacgatgctggaacatcgaacacggtt
gatgttctaaaacaggtggaagaatctgcaagtaaacatttggaagaaaccacaaaagtt
aataacaagtcttcaatggatcctgaggttcggcctctggtaaaaagatctgttacagcg
ggatctcttggaaagcaaccaaagcatgatcttatcaaagatgatggtaaatctgggaaa
gttcttggcaaaacttcaggaaacgcgaacatgagtgctgcttcagctaaaggaacaaac
acatctacacgatcttctgatccccacatcgagacaaagccagatattgtgaattccaag
ttatcggattcaagggtttctggtggaaaggatgatgatattgaatctacagaagtgcac
aaacagcctatgtcttggtctattcactctcccaggcaggaaaataatttgaagtctgag
aaaccactgaagagactcagtccagctgaagagcatgacaggctaaataaacgtaggaaa
ggggaaagtgatgtgagagacttagatgggagtgacattagaatacttgagaaagagaga
ccaagtgatgcacgatctgctgataaacttcaaccaataactttcgaaaaggcagtctcc
gatgaactgagcagtagtagggtcatggataaacctgtggataggtcaaaagataagaat
agtgaaagatatgatagggattacaaggaccggttagagcgtcctgaaaagtcacgtggt
gatgatttgttgtctgaaaaattgagagacagatcgctggaaaggcatggaagggaacga
tcccttgaaaaagtccaagagaagggcactgataggaattttgataggctcggtaaggat
gataaaaataaagatgaaagaagcaaagtacggtacagtgaagcatctggagataaatca
catgtagatgatagatttcttggccaaagcttgcctccaccaccacctctccctccacat
gtcatcccccattcagttaatgccaataggagggatgaagatgctgatagacgatttgga
aatgccagacatccacaaaagctttctcctaggcatgaagacagagaacgcagaagatct
gaagaaaatactttattaataccggatgattcaaaacggagaagagaagatgaatttcga
gatagaaaacgcgatgagcgggatgcatcaactacgaaggtggacgatagggagagagat
aaaacgaacattaacaaggatgatatggactcaacttctaagaggcgtaaactcaaacga
gagcacattttgtcagagcctggagaatttttaccagcactggcaccgacaccaccacct
ctttcgattaatctgtcacagacacatgatggaagagacagaggtgatcataagggtgta
atggtccaacgcccaggctatatagatgagtcaggcatgaggatacatggcaaagaagca
gtcagcaagacaacaaggcgtgatatcgatctaatgtatgacagagattgggatgaagac
aagaggcagagagtcgaaccaaagagaagacatcgtaagtaa
DBGET
integrated database retrieval system
