Henckelia pumila: 140881742
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Entry
140881742 CDS
T11037
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
hpum
Henckelia pumila
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hpum04121
]
140881742
Ubiquitin system [BR:
hpum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
140881742
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR75_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR36-Utp21_2nd
TRM82_WD
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_IFT140_1st
PAC11
ARM_TT21_C
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
140881742
NCBI-ProteinID:
XP_073143424
LinkDB
All DBs
Position
1:75787464..75814499
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AA seq
759 aa
AA seq
DB search
MDSSICFHDGSITNFINSRTIGVHHDFNKDVQTHSSLLRRMSLESELKGHRGCVNALAWN
SEGSLLVSGSDDTRLNIWSYSNRKLLHSIDTGHSANIFCTKFVPETSNELVVSGAGDAEV
RLFNLSRLNGREQEDHGSNPLALFQCHTRRIKKLAVEAGNPNVVWSASEDGTLRQHDFRE
CASCPAAGSPHQECRNVLLDLRSGAKKSLADPPKHVLMLKSCDISYARPHLLLVGGSDSF
ARLYDRRMLPPMSSSQKKMPSPPCVNYFCPMHLSDLGNYSFHLTHVTFSPNGEEVLLSYS
GEHVYLMDANLASGSTMRYTSEDVAKLISFYPPHNGAYLHSSAWGIYLNGFPVRSKTSAG
LKKCRELIQIADRALKGESDYYYGIEACHEVLDFLGHEMEPTIMLECLCIRASLLLKRRW
KNDVHMAIRDCYQARKIDPSSVRALICMAEGLTMLNKHKQALDFAIAAQALAPSDFEVME
KVENIKKSIAAAEIEADMHSDGGSKSEYQTERVLSLSDIIYHSEADNALLDGPEREDSEY
EELELDFETSISGEGGDGVDSAILDRNLNLRIRRRDDTALENGRPNGTCGSPQLSSENDK
VPYQPETVTDMKQRYIGHCNVGTDIKQASFVGQRGEYVASGSDDGRWFIWEKKSGRLLKM
LRGDEAVVNCIQCHPYDSVIATSGIDSTIKIWTPNSPVPSIVAGGAAGPETSNVLDAMEE
NQRRLSRTREAILPFEILERFRMHEFAEGRFHPFECTQS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggactcctcaatctgctttcacgacggcagcatcacaaatttcatcaacagtcgaaca
atcggggttcaccatgattttaataaagatgtgcaaacacattcctcactcttacgaagg
atgtcactggaaagtgaactgaagggacaccgtggttgcgtaaatgctttggcatggaat
tcagaaggttcgctgttggtgtcggggtccgatgatacacgacttaatatttggtcttat
tcaaaccgaaaacttttgcactccattgacactggccattctgctaacatattctgtaca
aaattcgttcccgaaacttccaatgaattggttgtttctggggcaggggatgctgaggtg
cgactgttcaatttatctcgtttaaacggcagagaacaggaggatcatggaagcaaccca
ttagcactttttcaatgtcacacaaggaggattaaaaaattagctgtggaagccggaaat
cccaatgtggtgtggagtgctagtgaagatgggacactgagacagcatgattttcgtgaa
tgtgcttcatgccctgccgctgggtcccctcaccaagaatgccgtaacgtccttcttgat
ttgcgttctggagctaaaaaatcattagcagatccacccaaacatgtgcttatgttgaag
tcttgtgatatcagttatgctagacctcatttacttctcgttggcggcagtgattcattt
gcgcgtttgtatgatagacgaatgctaccaccaatgtcttctagtcagaaaaagatgcca
tcaccaccatgcgtcaattacttttgtccgatgcatctttctgaccttggtaattatagc
tttcatcttactcatgtcacttttagtcctaatggtgaggaggttcttcttagttacagt
ggggagcatgtgtacttgatggatgcaaatctcgcttctggcagtacaatgaggtacaca
tcggaagatgtcgcaaagcttatcagcttttatcccccacataatggagcatatttacac
tcctctgcgtggggtatatatctgaacggttttcctgtaagaagcaagacttcagcaggg
cttaaaaagtgcagggagttgatccagattgcagacagagctttaaaaggagagtcggat
tattattatggaatcgaggcttgccatgaagttttggattttcttggtcatgagatggag
ccgactattatgcttgagtgtttgtgtattcgtgcatcattgttgctcaagcggagatgg
aaaaatgatgtgcacatggctatcagggactgctatcaagcccggaaaattgatccatct
tcagttagggcattaatttgtatggctgaaggcttgaccatgttaaacaagcacaagcaa
gccttggactttgctattgcagctcaagctttggctccatcagattttgaagtcatggaa
aaggtggaaaacataaagaagagcatcgctgcagctgaaattgaagctgacatgcatagc
gatggagggtcgaagtctgaatatcaaactgaaagagtactttctctgagtgatatcatc
taccattcagaagcagacaatgctttattagatggtccagaaagagaagactctgaatat
gaagaactagaattggattttgaaacatcaatatcgggtgaaggaggagatggagttgac
tctgctattcttgataggaacttgaatttaagaattcgcaggagagatgatacggcattg
gaaaatggaagacctaatggtacttgtgggtcgccccaattgtcaagcgaaaatgataaa
gtgccatatcagcccgagactgtaacagatatgaagcagagatatattggtcactgtaac
gtaggaaccgacataaaacaagctagttttgttggccaaagaggcgaatatgttgccagt
gggagtgatgacggacggtggtttatctgggaaaaaaaatctggtcgattattaaagatg
ctgcgtggagatgaagctgttgtaaactgtatacaatgccatccatatgactctgtcatc
gcaacaagtggaattgacagcaccataaagatctggactccaaattctcccgtcccttct
attgtagctgggggagccgcaggaccagagacttcaaatgtattagatgctatggaagaa
aatcaacgtagattatctcgaactcgggaagcaattttgcccttcgaaatcctggagcgg
ttccgcatgcatgagtttgctgaaggaaggtttcatccatttgagtgcacacaaagctaa
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