Henckelia pumila: 140882068
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Entry
140882068 CDS
T11037
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140882068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hpum03041
]
140882068
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140882068
Spliceosome [BR:
hpum03041
]
Complex C
Other components
Step II factors
140882068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
nSTAND_NTPase5
T2SSE
NB-ARC
ATPase
Motif
Other DBs
NCBI-GeneID:
140882068
NCBI-ProteinID:
XP_073143916
LinkDB
All DBs
Position
2:181711973..181719078
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AA seq
711 aa
AA seq
DB search
MPSMASNSSTPSDVNKLKEPKSDALIRRQKIEQHKKALPIAAVEQRLLEEVCKNDVLIIV
GETGSGKTTQLPQYLFNGGFCRSGGLIGITQPRRVAAVTVAKRVAEECAVALGQKVGYAV
RFDDVTSSSTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVQTDVLLGLLKNVQK
IRSQGASDIVNGDCTKVENGILKENAIQYTSWLKHCRDKKLSPLKLIIMSASLDAQVFSE
FFGGAKAVHVLGRQYPVDILYTHQPETDYLDAALITIFQIHLEEGPGDILVFLTGQEEIE
SIERLINERLPKLPEIKCKLLIFPMFASLPSEKQMKVFSPAPLGFRKVILATNIAETSVT
IPGIKYVIDPGMVKMRSYDASTGIEPLIIVKTSKAQALQRSGRAGREWPGKCFRLYPESE
FEKLKDSTTPEIKRSNLSNVILQLKALGIDDIMGFNFIEEPSRIAIIKSLELLFLLGALT
EAGKLSDPVGRQMARLPLDPIYSKALVVANQFNCLEEMLIIVALLSVESIFYAPREKLEE
SRTALRSFSSPEGDHLTLLNVFRVSAEFLQKNKLISSEEKAEKKLRKWCKENFINGRSLK
HARDIHSQIRKNAEQMGLSITSCGDDMLVFRRCLAASFFLNAALKQADGTYRALSSGLMV
HIHPSSVLFRAKPECVIFDELVRTNQNYVRNVSRIDYLWLVELAPQCYAMQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggcttctaatagctccactccttcagatgtcaataaactaaaggaaccc
aaatccgacgctttaatcaggaggcaaaagattgagcaacacaagaaagcactgccaatt
gctgcagttgaacagagactcctggaggaggtttgcaagaatgatgtactaattattgtt
ggtgaaactggaagtgggaagacaactcagctaccccagtatctttttaatggaggattc
tgccgcagtggtggactcattggtataactcaacctagacgtgttgctgctgtgaccgtt
gcgaaacgagttgcagaggaatgtgccgttgcattggggcaaaaagttggatatgctgtc
agatttgatgatgtgacttctagttctacgaggatcaaatacatgacagatggcttgtta
ttgagggaagcattattggatccatatctctctaaatattctgttattatcgttgatgag
gctcatgagagaacagtccagactgatgtactgcttggtctgttgaagaatgtacaaaag
ataaggtctcaaggtgccagtgacattgtaaatggtgattgtacaaaagttgagaacggc
atactaaaagagaacgctatccaatataccagctggctcaagcattgtcgagacaaaaag
ttatctccgttgaagttaattatcatgtctgccagtctggatgcacaagttttttctgag
ttctttggtggtgcgaaagccgtccatgtcctagggcgtcaatatcctgttgacatacta
tacactcatcaacctgagaccgattatttagatgcagccttgattactatattccagata
catctcgaggaaggtccaggtgatatacttgtgttcttgacaggccaagaagagatagaa
tccattgagaggttaattaatgagcgccttccaaagttgcctgaaatcaagtgcaagctt
cttatctttccgatgtttgcatctcttccttctgagaaacagatgaaagttttcagtccc
gcaccccttgggtttcgcaaggtaatattagcaaccaatattgccgagacttcagtgaca
atacctggaattaagtatgtcattgacccaggaatggtgaaaatgcgctcatatgatgct
tctacagggatcgagccattgatcattgtcaaaacttcaaaagcacaagctcttcaaagg
agtggacgtgcaggtcgtgaatggcctggaaaatgcttccgcctttatccggaaagtgaa
tttgagaagctcaaagattccactacgccagaaatcaagagatccaacctctcaaatgtt
attttacaacttaaagcattaggcattgatgatattatggggtttaacttcattgaagaa
ccttccaggattgccatcatcaagtcgctggagctgttattcttgttaggtgctctcaca
gaagcgggtaaattatccgatccagttggacgtcaaatggccaggcttccattggatcct
atttattccaaagcactggttgttgccaatcaatttaattgcttagaagaaatgttaata
attgttgcactgctctcagtcgaatctatattttatgctccacgtgaaaagttggaagag
tcacgaactgctttgagaagcttctccagtccggagggggatcatttgacattactgaac
gttttccgtgtttctgctgagttcttgcaaaagaacaagctgataagcagtgaagaaaag
gctgaaaagaaactccgaaaatggtgcaaggaaaactttattaacggccgctccctaaag
catgctcgtgatatccacagtcaaatacggaagaatgccgaacagatgggtctgagtatc
acttcgtgtggagatgacatgctcgtgttccgcagatgcctcgctgcttcgtttttcctt
aacgcggcgttgaagcaggctgacggtacttacagggctttgtcgagtggcttgatggtg
catattcacccgtcttctgtgctattccgtgcgaaaccagagtgtgtaatcttcgacgaa
cttgttcgaacaaaccaaaactatgtacgcaacgtttctagaatagattacttgtggtta
gttgagttagctcctcaatgttatgccatgcagtag
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