Henckelia pumila: 140882419
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Entry
140882419 CDS
T11037
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hpum Henckelia pumila
Pathway
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140882419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hpum03041
]
140882419
Spliceosome [BR:
hpum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140882419
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
NBCH_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
WD_LRWD1
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
140882419
NCBI-ProteinID:
XP_073144511
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Position
2:18954344..18958382
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AA seq
576 aa
AA seq
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MDSDDKTTVSTSFDEASAPASDDEMGVSAMDTTSLQPAQPVMAPTILAPGFPPIAPIPVV
PLPVPRPLAPLPPRPPVVRPPLGQNGDSKASDSDSDQDESGYIRPPTGSNQEYEISEESR
QVRERQEKVMQELLMKRHAAAMAVPTNDGAVRTRLRRLGEPITLFGEKEMERRDRLRALM
AKLDSEGQLEMLMKVHEDEEAAAMMAPTRPDEDIQYPFYTEGSQALLEARKEIAKYSIVK
AALRLHRAKKKRDDPDEDLDAEVDWSLKQVEKMALDSSEIGDDRPLSGCSLSHDGKMLAT
CSLSGVAKIWSMPEVTKVSSLKGHSERASDVAFSPINYQLATASADRTARLWNPDGTVLR
TFEGHLDRLARIDFHPSGRYLGTASFDQTWRLWDVETGEELLLQEGHSRSVYGLSFHHDG
SLAASCGLDSLARVWDLRSGRSILALEGHVKPVLGLSFSPNGYHLATGGEDNTCRIWDLR
KRKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSSRDFKPVKTLSGHESKVTS
LDIVGDGQCIVTVSHDRTIKLWTSKESEKEKAMEVD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggactcagacgataaaactacagtctctacttcatttgatgaggcttcagctccagct
tctgacgacgaaatgggcgtctctgcaatggatacaacgtctcttcaaccagcacaaccg
gtaatggcacccaccatcttagccccgggctttcctcctattgccccaattcctgttgtg
cctctaccagttcctcgcccattagcgccactgcccccacgccctcctgtcgttagaccg
cctttaggccagaatggagactcaaaagctagtgattcagattctgatcaagatgagtct
ggatatattcgtcctccgacaggatcaaatcaggagtatgaaatctctgaagaaagcagg
caggttagagagaggcaagagaaagtgatgcaggaacttttgatgaagcgtcacgcggct
gctatggcagttccaaccaatgatggagctgttcgaacccgactacggcggcttggtgaa
cctataactctcttcggggaaaaggagatggagagacgtgatcgtttgagggcacttatg
gcaaaacttgattctgaaggccagctggaaatgctgatgaaagttcatgaggatgaagaa
gctgcagccatgatggcaccaaccagaccagatgaagatattcagtatcccttttacact
gaaggttcacaagcacttttagaggcccgtaaagaaattgcaaaatattcaatagttaaa
gctgctttgcgccttcatcgcgcaaagaagaaaagggatgatcctgacgaggatttggat
gctgaggtagattggtctttgaaacaggtagaaaagatggccttggattccagtgagata
ggtgatgatcggcctctttctggatgctcgctttcacatgatgggaagatgcttgccacc
tgttctctaagtggtgttgcaaagatatggagcatgcctgaagtaacaaaggtttcttcc
ctaaagggccactcagaaagagcctcagatgttgcattctcaccaataaactatcaattg
gctaccgcctctgctgataggaccgcaagattatggaatcctgacggtacagtcctgaga
acatttgaaggtcatttggatcgtcttgctcgtattgatttccatccatctggaaggtac
ttgggcactgccagttttgaccaaacttggagattatgggatgtggagactggtgaggag
ttacttcttcaagaaggccatagcaggagtgtgtatggattgtcttttcaccatgatggg
tcgttagcagcatcttgtggactagattctctcgctcgagtgtgggacctaaggtctggg
aggagtattcttgctctggaaggccacgtcaagccagttcttggcctcagtttttccccc
aacggttatcatttagctactggtggggaagataacacatgccgaatatgggatctgagg
aaaagaaaatctttgtacattatacctgctcattctaatcttatttctcaagtcaaattt
gaacctcaggagggatactttttagtcactgcttcatatgacatgactgctaaggtctgg
tcctcgagagatttcaagcccgtaaagactttgtctggtcatgaatcaaaagttacctca
cttgatattgtgggagatggacaatgtattgtgactgtttcacatgatcgaactatcaag
ttatggacaagtaaagaaagtgagaaagaaaaggcaatggaagttgactga
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