Henckelia pumila: 140882576
Help
Entry
140882576 CDS
T11037
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
hpum Henckelia pumila
Pathway
hpum03013
Nucleocytoplasmic transport
hpum03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140882576
mRNA cycle factors
P-body specific factors
140882576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Xpo1
HNOBA
Motif
Other DBs
NCBI-GeneID:
140882576
NCBI-ProteinID:
XP_073144758
LinkDB
All DBs
Position
1:91514023..91525437
Genome browser
AA seq
1198 aa
AA seq
DB search
MEHAEEIGGEHHEKHDDDGRHDVEEANARLEELKKSIEAKMALRQSNLKPERPDSGFLRT
LDSSIKRNTAVIKKLKQINEEQREGLIDELRGVNMSKFVSEAVTAICDAKLKAADIQPAV
QICSLLHQRYKDFSPSLVQGLTKVFASGKSVEDLDTDKNSRSMKKRSTLKLLLELYFVGI
IEDCGVFINIIKDLTSNEHLKDRDATQTNLSLLGSFARQGRFLLGFPLTGFDILEEFFKE
LTVTADQKKFFRKTFQIYYDASVELLLSEHALLRQMEHENAKILNAKGELSEEHASSYER
LRKSYDHLSRGISSLAEALDLQPPVMPEDGHTTRVTSGEEVLSPVSSKDSSALEALWDDE
DTKAFYECLPDLRAFVPAVLLGEAEPKLNDQSPKTQELPTDLASESEKDQMSTLENSEAS
GSEALADDKQDKDTEKGKEPEKEKGKEKDAERRGENEKDKVKGLDGTNLEALLHRLPSCV
SRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSIL
LQLLEEEFNSLTNKKDQMNIETKIRNIRFIGELCKFKIAPAGMVFSCLKACLDDFTHHNI
DVACNLLETCGRFLYRSPETTVRMSNMLEILMRLKNVKNLDPRQSTLVENAYYLCKPPER
SARISKVRPPLHQYIRKLLFSDLDKFSIENVLRQLRKLPWSECEEYLLKCFLKVHKGKYS
QIHLIASLTAGLSRYHEDFAVSVVDEVLEEIRLGLELNDYGMQQKRVAFMRFLGELYNYE
LVDSSVIFDTLYLTLDFGHGTMEQDILDPPEDCFRIRIIITLLQTCGHYFDRGSSKRKLD
RFLIHFQRYILSKGSIPLDIEFDLQDVFADLRPKMTRYSSLEEVNNALIELEEHERRVSS
EKAQNEKHSDSEKRHSRTSYSDSEKRHSRTSSGALSMNGQNLVNGTEENDDLYQEIVGET
DSDSGSGTVERVDHDDEESEGENQDDGCESEDDYEEGGHPASDEDDEVHVRQKVAVVDPQ
EVADFDQELRALMQESLDSRKLEMRSRPAINMMLPMNLFEGSTREHHGRGIEGESGDEMT
DEGTGEAKEVRVRVLVKRGNKQQTKQMYIPHDCSLVQGTKQKEAAELEEKQDIKRLVLEY
NDREEEELNGGTQQPGWTQSGGRVVNRGNMLDGQNRTSGSRHRHLYHSGAGIYYGRRR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgctgaagaaattggcggcgaacatcatgagaaacatgatgacgatggaaga
cacgatgttgaggaagctaatgctcgtctagaggaattaaagaagtccattgaagcaaaa
atggctctgcgacagagtaatttgaaacctgaaagacctgactcaggttttctcaggaca
ttggattctagcatcaaacgtaacacagctgttattaaaaaattaaagcagatcaatgaa
gagcagcgagaaggcttgatagatgagttacgtggtgttaatatgagcaaatttgtcagt
gaagctgtaactgctatttgtgatgcaaagcttaaagctgcagacatacaacctgctgta
cagatctgttctttacttcatcaaaggtacaaagatttttcaccttctctagttcaaggt
ctcactaaagtttttgcgtcgggaaaatctgtcgaggatttagatacagacaaaaattca
agatccatgaagaaacggagtactcttaaacttctattggaactttactttgttggaatt
atagaagattgtggcgtctttataaatatcatcaaggatctcactagcaatgagcatttg
aaggatcgtgatgcaacccagacaaatttgtctcttcttggcagttttgcacgacaggga
agatttctgcttgggtttccactaactggatttgatattctggaagagtttttcaaggaa
cttactgttacagctgatcagaagaaattctttaggaagacttttcaaatttactatgat
gcttccgtggaacttctcctgtcagaacatgctttacttcgccaaatggagcatgagaat
gcgaagattttgaatgctaaaggtgaactgagcgaggaacatgcttcatcttatgaaagg
ctccgtaaatcatatgaccatctaagtcgtggcatctcatctttagctgaagcgcttgat
ttgcaacctcctgtgatgccagaggatggtcatacaaccagagtcacatctggggaggaa
gttctatcacctgtttccagtaaagattcctctgctcttgaagccctttgggatgatgaa
gatactaaagctttctatgaatgcctaccggatcttagagcatttgttcctgctgtcttg
cttggagaggcagaaccaaagttgaatgaccaatctccaaagactcaggaactaccgact
gatttggcttctgaatcagaaaaggatcagatgtctaccctggaaaactcagaggcttct
ggatctgaagctttagcagatgataagcaagataaggacacagaaaagggcaaagaaccc
gaaaaagagaagggaaaggagaaggatgctgaaagacgaggagaaaacgaaaaggacaaa
gttaaaggtcttgatggaacaaatctcgaagctttgctacataggcttccaagctgcgtg
agccgtgacctgattgatcagttgactgttgagttttgctatttaaattcaaaatccagc
aggaaaaagcttgtgagggctttgtttaatgtcccaaggacgtctctggagctcttgccg
tactattcgcgcatggttgctacactttctacttgcatgaaggatgtctcttccatcctt
ttacagttattggaggaagaattcaactctttgacaaataagaaggatcaaatgaatatc
gaaacaaagatcaggaacattagatttattggagaactttgcaagttcaaaattgcccca
gctggaatggtttttagttgtctaaaggcttgtttggatgatttcactcaccacaatatc
gacgttgcttgcaatctgcttgagacatgtggccgctttctctatcggtcaccagaaacc
acagtgcggatgtcaaacatgttagagatactaatgcgcttgaaaaatgtcaaaaacttg
gatccccgtcagagtactttagtggaaaatgcttattatttgtgcaaacctcctgaaaga
tctgcacgaatctcgaaagttcgtcctcctttgcatcagtatatcaggaagcttcttttc
tctgatcttgacaagttttcaattgagaacgttctacgacaattacgtaagctgccttgg
agtgaatgtgaagaatatcttttgaagtgttttttgaaggttcacaagggaaaatatagc
cagattcatttgatcgcatcacttactgctggtctgagtcgatatcatgaagatttcgct
gtttctgtggttgatgaggttttggaggaaatcaggctagggttggagttgaatgactat
gggatgcagcaaaaacgtgttgcattcatgcggttcttgggcgaactgtacaactatgaa
cttgttgattcatctgttatttttgatactctctatcttactcttgattttgggcatgga
actatggagcaagatatacttgatcctccggaggactgctttcgtataagaataattatc
acacttctccagacatgcgggcattattttgatagaggttcatcgaaaagaaagcttgat
cggttcttgattcattttcaacgatacattctgagcaaaggttccattcccctggatatt
gagtttgacctgcaggacgtgtttgctgatttgcgcccaaagatgactcgatactcatca
ttggaggaggttaataatgctctaattgaacttgaagagcatgaacgtagagtttcatca
gagaaggctcagaatgagaaacattcagactcagaaaaacgtcatagcaggacgagctat
tcagactcagaaaaacgtcatagcaggacgagctctggtgctttatccatgaatggacaa
aatcttgttaatggcaccgaggaaaatgatgatttgtatcaagaaattgtcggcgagacg
gatagcgattctggtagtggcactgttgagcgcgttgatcatgatgatgaagaatcggaa
ggagaaaatcaagatgacggttgtgaaagtgaggatgattacgaggagggaggtcatcct
gcttcagatgaagatgatgaagtacatgtcaggcagaaggtggcagtggtagaccctcag
gaggtggctgattttgatcaagaactgcgggctttaatgcaggagagcttggattcgaga
aagttggaaatgcgctctcgcccagcgataaacatgatgttgccaatgaatttgtttgag
ggttccacgagggaacaccatgggagaggaatcgaaggagaaagtggcgacgagatgact
gatgaaggaactggagaagctaaggaggtgcgggtgagagttctggtaaagcgtggaaac
aagcaacagacaaaacaaatgtatattccccatgattgctccttggttcagggtaccaaa
cagaaagaggcagctgagcttgaagaaaaacaagacattaaacgacttgttttagaatac
aatgatagagaagaagaggaactcaatggagggacacaacaaccaggttggactcaaagt
ggaggcagagttgtgaaccgaggcaatatgttggatggacagaataggacttctggttca
aggcatcgacatctgtatcattcaggtgctggcatttactatggcaggagaaggtaa
DBGET
integrated database retrieval system
