Henckelia pumila: 140883852
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Entry
140883852 CDS
T11037
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
hpum Henckelia pumila
Pathway
hpum03030
DNA replication
hpum03420
Nucleotide excision repair
hpum03430
Mismatch repair
hpum03440
Homologous recombination
hpum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140883852
03420 Nucleotide excision repair
140883852
03430 Mismatch repair
140883852
03440 Homologous recombination
140883852
03460 Fanconi anemia pathway
140883852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hpum03000
]
140883852
03032 DNA replication proteins [BR:
hpum03032
]
140883852
03400 DNA repair and recombination proteins [BR:
hpum03400
]
140883852
Transcription factors [BR:
hpum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140883852
DNA replication proteins [BR:
hpum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140883852
DNA repair and recombination proteins [BR:
hpum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140883852
MMR (mismatch excision repair)
140883852
DSBR (double strand breaks repair)
HR (homologous recombination)
140883852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
140883852
NCBI-ProteinID:
XP_073146550
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All DBs
Position
2:75225201..75228785
Genome browser
AA seq
624 aa
AA seq
DB search
MAKTVSPDAISTILANPCPDSTSDLPEIIIQVVDLKPTGSKFMFMASDGKKKVRALLQST
LSSEVTSGNIQNLGLIRILDYTLNDISTKNEKYLIVSKCESVSPALESEYKAGVKTEETE
TVLKSEQEIDVKNEVKSEGTSSVLKPKQEIVAKSAHQIVQEQHGNMAPAARMSMTRRIHP
LVSLNPYQGNWTIKVRVTSKGNNRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF
YDKFQMGKVYFISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVFNEAAFIPETKYNFVP
IDELGPYVHGRELVDVIGVVQNVSPTMSIRRKSNNESVPKRDITIADETKKTVVVSLWND
LATNVGQELLDMADKSPIVAIKSLKVGDFQGVSLSTLSKSVLVVNPATPEANKLRSWFES
EGKETPMASVGSGLSPSTKGGARSMYSDRVSLAHITNNPSLGEDKPVFFCIKAYISSIKP
DQTMWYRACKTCNKKVTEAVGSGYWCEGCQKNEEECSLRYIMAVKVSDASGEAYLSVFNE
QAEILVGCSADELNVLKSQDGDSSYQMKLKEATWVPHLFRVSVTPHEYNNEKRQRITVKA
VAPIDYVAESNHLLEEISKMKLSK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacagtgagcccagatgcgatttctactattctggctaacccgtgtcctgat
tctacgtcagatttgcccgaaattatcatacaagttgtcgatctgaagcccaccgggtcg
aagttcatgtttatggcgagtgatggtaagaagaaggtgagagcactgttgcagtccact
ttatcatcggaagtaacctctgggaacattcagaatctgggtctcattcgcattcttgat
tacactctgaacgacatatcaaccaagaacgaaaagtacttgatcgtatcaaaatgcgag
tctgtgtctccagcgcttgagtcagagtacaaagcaggtgtgaaaactgaggaaactgag
actgtgttgaagtctgagcaggagattgatgtcaagaatgaggtaaagagtgagggtacg
agcagtgtattgaagcctaagcaagaaattgtggctaaatcagctcatcaaatagttcaa
gaacagcatggaaatatggcacctgctgcaagaatgtccatgacacggagaattcatccg
cttgtgtccttgaatccataccagggtaattggaccataaaagttcgcgtcaccagcaaa
gggaacaatcgttcttacaagaatgctagaggagaaggttgcgtgtttaatgtagagttg
acggatgaagatggaacacaaatacaagctactatgttcaacgaggcagcccggaagttc
tatgataagtttcagatggggaaggtttattttatatcgaagggcacattgaaagttgcc
aacaagcaattcaaaactgtacaaaacgattacgaaatgacattgaatgaaaattctgaa
gttgaggaagtcttcaatgaggcagcttttattcctgaaacaaaatacaattttgtccct
atcgatgaactaggcccatatgtccatggaagagaactcgtggatgtaattggcgttgtg
caaaatgtatctcctacaatgagtatccgaaggaaaagtaacaacgagtcagtgccaaag
cgtgatataacaattgctgatgagacgaagaagactgtagtggtgtctctatggaatgat
cttgccacaaatgtaggacaagaactgctggatatggcagataaatctcctattgttgcc
ataaaatctcttaaagttggagacttccagggcgtatcattgtccacactgagcaaaagt
gttttagtagtcaatccagcaacaccggaagccaataagttgagatcttggtttgaatct
gaaggtaaagaaacacctatggcctctgtaggttctggtttaagcccttccacaaaaggt
ggtgcgcgttctatgtactcggatcgagtctccttggctcatattaccaataacccctcg
ttgggtgaggataagcccgtatttttctgcatcaaggcatacattagctctatcaaaccc
gaccaaacaatgtggtatcgggcttgcaaaacatgtaacaagaaagttactgaagctgtt
ggttcgggatattggtgtgaagggtgccagaaaaatgaagaagagtgcagtttaagatac
attatggcagtaaaggtttctgacgcaagtggtgaagcttatctatctgtgttcaacgaa
caagcagaaatattagttggatgctcagcagatgagctaaatgtattgaaatctcaggat
ggagacagttcttatcaaatgaaactgaaagaagctacatgggttcctcaccttttccga
gttagcgtcacaccacatgaatacaacaacgagaagaggcagaggataaccgttaaagct
gttgcgcccattgattacgtcgctgaatccaatcatttgcttgaagaaatatcaaagatg
aaactgtctaaatag
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