Henckelia pumila: 140886418
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Entry
140886418 CDS
T11037
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
hpum Henckelia pumila
Pathway
hpum04120
Ubiquitin mediated proteolysis
hpum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
140886418
04120 Ubiquitin mediated proteolysis
140886418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hpum04121
]
140886418
Enzymes [BR:
hpum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140886418
Ubiquitin system [BR:
hpum04121
]
Ubiquitin ligases (E3)
U-box type E3
140886418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF5770
Motif
Other DBs
NCBI-GeneID:
140886418
NCBI-ProteinID:
XP_073149096
LinkDB
All DBs
Position
3:complement(201474626..201490667)
Genome browser
AA seq
1036 aa
AA seq
DB search
MATQRPQRTPAEIEDVILRKIFIVSLFDSMENDSRIVYLEMTAAELLSEGKDLKLSREVM
ERVVIDRLSGDFPAAEPPFQYLLNCYRRAYDEGKKIASMKDKNVRGEMELVVKQAKKMAV
SYCRIHLGNPDMFPNHQTTKSNVSPLLPLVFSEVGSNLDAFGGTSSGISCPPGFLEEFFR
DADYDSMEPVLKQLYEDLRGSVLKVSALGNFQQPLRALLLLVNYPVGAKALVNHPWWIPK
GVYLNGRVIEMTSILGPFFHVSALPDHAIFKSEPDVGQQCFSEASTRRPADLLSSFTTIK
TVMNNLYDVLAEVLMCLLKNTNTRDNVLEYIAEVINRNSSRAHLQVDPLSCASSGMFVNL
SAVMLRLCEPFLDANLSKREKIDPKYVFHCNRLELRGLTALHVSSEELSEWINNNAAKVD
TAANNNDEQYRLLQSQEATSSSSKANVPSIQNKNPVSTSSGNAKYPFICECFFMTARVLN
LGLLKAFSDFKNLVQDISRSEDTLSSFKAMLEQSPSPQLQQDISRLEKEIELYSQEKLCY
EAQMLRDGGLLQRALSYYRLMVVWLVGLVGGFKMPLQSPCPMEFSSMPEHFVEDTMELLI
YASRIPRALDGVILDDFMNFIIMFMASVDYIRNPYLRAKMVEVLNCWMPRRSGSKATETL
FEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNVWRK
IAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEHKELEAEMSNAAEWERRPAQERQERT
RLFHSQENIIRIDMKLANEDVSMMAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQR
KSLSLKDPEKYEFRPKLLLKQIVNIYVNLERGDKENNFAVAITKDGRSYNEQLFGAAADV
LRRIGEDAKIIQEFVDLGAKAKLVASEAMDAEAALGDIPDEFLDPIQYTLMRDPVILPSS
KITVDRHVIQRHLLSDSTDPFNRSHLTGDMLIPNVELKTKIEEFIKSHDIKRHGQDSSMQ
NTKATIQTTDTTNLIE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcaaaggcctcaaagaacccctgcagaaatcgaggatgtaatcctccgtaaa
atattcattgtctctctcttcgattccatggagaacgattctcgaattgtatatctagag
atgaccgccgcagagcttctgagcgagggtaaggacctcaaactttcgcgagaagtcatg
gagagagtggtaatcgaccggctatccggcgacttccccgccgccgagccgccgtttcag
tacttgctcaattgctatcgtcgcgcctacgatgaagggaagaaaatcgcgtccatgaag
gataaaaacgtcagaggagagatggagttagtggtgaagcaagctaagaaaatggcagtt
tcctactgtagaattcacttggggaatcctgatatgtttccgaatcaccaaacgactaaa
tcgaatgtctcgccattgctgcccttggttttttctgaggttgggagtaaccttgatgct
tttggagggactagttctggaatttcgtgtcctccagggttcttggaagaattttttaga
gatgcggattatgattcgatggaacctgttttaaagcagttgtatgaggatttgagaggg
agtgtcttgaaagtttctgcgctggggaactttcagcaaccattgagggcgttgttgctg
ttggtgaactatccagtgggggcaaaagctttagtcaatcatccgtggtggattcccaag
ggcgtttatttgaacgggagagtgattgagatgaccagtatattggggccgtttttccat
gttagtgcattacctgatcatgctatcttcaagagtgaacctgatgttggtcaacagtgc
ttctcagaagcatctactcgacgtcctgcggaccttctatcatcctttacaactatcaaa
actgtgatgaacaatttgtatgatgtgttggcggaggttctcatgtgcctgcttaagaat
acaaatactcgcgataatgttcttgagtacattgcagaggttatcaataggaactcttca
agagctcatttgcaggtcgatcctttatcttgtgctagttctggcatgtttgtaaatctc
agtgctgtgatgcttcgtctgtgtgagccattccttgatgccaatttatctaaaagggaa
aaaattgatcctaaatatgtgtttcactgtaaccgcttggagctgagaggattgacagct
ctgcatgtatcatcggaagaattatctgagtggattaataataatgctgcaaaagttgat
actgcagcaaataataacgatgaacaatatcggttgctacaatctcaagaagctacaagt
tctagcagtaaagctaatgtaccttctatccaaaacaagaatcctgtttccacaagtagt
ggaaatgccaaatatccattcatttgtgaatgcttcttcatgactgctagggtgcttaac
ttggggctgctgaaagcattttccgacttcaaaaatcttgttcaggacatttctagatct
gaagatacactatcctctttcaaagccatgctagagcaatccccttctccacaactgcag
caagatatatcacgccttgaaaaagaaattgagttgtactcacaggagaagttatgctat
gaagctcagatgctaagggatggagggctccttcagcgtgctttgtcttattaccgccta
atggtagtttggttggttgggttagtaggtggttttaaaatgcctttacaatcaccttgc
ccaatggaattttcctcaatgccagagcattttgtggaagacacaatggagttgcttatt
tatgcttcacgaattcctagagctctggatggggttatcctggatgattttatgaacttc
atcattatgttcatggctagcgttgactacatcagaaatccttatctaagagctaaaatg
gtagaagtcctcaattgttggatgcctcggagaagtggctcaaaggcaacggaaacattg
tttgaaggacatcaattgtctcttgaatatcttgtgaggaatcttctgaagctttacgtg
gatattgaattcacaggttcccatactcagttctatgacaagtttaacatccgtcacaat
atcgccgaactccttgaatacttatggcaggttcctagccaccgcaatgtctggagaaag
attgctaaggaagaagagaagggtgtctatttgaactttctgaactttttgatcaatgat
agtatttatctgttggatgaaagtcttaataaaattctggaacataaagaactggaagca
gagatgtcaaatgcagcggaatgggagagaagaccagcccaagagaggcaggagagaact
cggttgttccactctcaggagaatatcattaggattgatatgaaattggcaaatgaagat
gtgagcatgatggcatttacgtcagagcagattacagctccttttctacttccagagatg
gtcgaaagagttgctagcatgctgaattactttttgttacaacttgtggggccccagaga
aaatctcttagcttaaaagaccctgagaagtacgagtttcgacctaaattgttgctaaaa
cagatagtaaatatatatgtcaacctggagagaggagataaggagaacaattttgcagtt
gccataacaaaagatggtcgatcatacaacgagcagttatttggtgctgcagctgatgtt
ttgaggagaattggcgaagatgcgaaaatcattcaagagtttgttgaccttggagcaaaa
gcgaaacttgtcgcttcagaggcaatggatgctgaggctgcccttggagacataccggat
gaattcctagatcccattcagtacaccttgatgagggatcctgtaattttgccttcgtca
aaaatcacggtggaccgacatgttattcagaggcatcttttgagtgatagtaccgatcca
ttcaatcgatctcatctcactggagacatgctaatacccaatgtagagttgaagacaaaa
atcgaagaattcatcaaatcccatgatattaagcgacatggacaggactctagtatgcaa
aacaccaaagctacgatacagacaactgatacaactaatctgattgaatag
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integrated database retrieval system
