Henckelia pumila: 140886515
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Entry
140886515 CDS
T11037
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140886515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140886515
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140886515
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140886515
mRNA degradation factors
3'-5' decay
Ski complex
140886515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140886515
NCBI-ProteinID:
XP_073149214
LinkDB
All DBs
Position
3:158557002..158580469
Genome browser
AA seq
1367 aa
AA seq
DB search
MDRVPAADGLSFRVGFTGHSGHLRIEPLPPVERQNPLHSIPDFILPPAFPRETPESVKEY
VKEKYLEPRLDEHIFCPQNSGKQWEFDWFERAKIQLEPSLPRSFVVPLWEMPSRRKRLGE
MDRWEPESVEVDILELTAGADNSGSLPRIVGPAKDFVRGSISSRPFRPGGLDDVDSLGKI
LPDGCYNGEWAQELLNGGTGQVLPPGFKEGLNLGHLKEHSCTWNVDKNTNGDKSMPAVKL
NELSLQFDDLFKRAWEEDVFEYVGDGHTRQFETPVESVDEPSQIATKIKDPTEIKDPPEI
KDSTKINDLNVADNVIKKPSSLLDEILSSESKELKSRLDGDTNIGGQQSKEAWALLGGSE
EIVERFEELVPDMALKFPFELDSFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFALAS
KHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPDATCLIMTTEILRSMLYRGA
DIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRNINFVLLSATVPNTFEFADWIGRTK
QKQIRVTGTIKRPVPLEHCLFYSGEFYKICENEKIIPQGLKAAKDVYKKKNSAAITSGAG
SGPLPANERARNQKRESSFNAKQAKHSGSQNLVNSGAGWGYQNNASNSWGLRRSEASIWL
SLINQLAKKFLLPVVIFCFSKNRCDKSADNLTGTDLTTSSEKSEIRIFCDKAFSRLKGSD
RNLPQVVRVQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPART
VVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDDIPEEKDLKHVLVG
SATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHTQKNLPEKQQLLMRKLAQPTK
IIECIKGEPGIEDYYELYSEAERYGNHIAEAVMQSPASQQHLTPGRVVLVKSQLAQDHLL
GVVIKAPSANYKQYIVLVLTPELPLGFQTPSSSGAKEQVDFQILVPKSKRGLGDDYYSSA
SSRKGSGVVNLKLPHHGLTAGVNYEVRGVENNEILSICSRKIIIDQVGLLEDVSVGAYSK
AVQQLLTLKSDGNKYPPALDPVKDLKLKDLDIVEAYYKWNILLQKMAQSKCHGCVKLDEN
IKMAREMKRHKEEVNALKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACE
MNSGEELICTEFLFENQLDGLEPEEAVAIMSAFVFQQKNTSEPSLTLKLSEAKKRLYDMA
TSLGELQSKFKLQVDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIL
RLDETCREFRNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggtgcccgccgcagatggtttatccttccgcgtgggattcacgggtcatagc
ggccacctcaggattgaacctctcccaccggtggaacgccaaaatccactccattccatt
ccagattttattctcccaccggctttccctagggaaacacctgaatcggtaaaagagtat
gtaaaggagaaatatttggagcccaggttggatgaacatattttttgcccccaaaattcc
ggaaagcaatgggaatttgactggtttgagagggccaaaattcagttggagccatctctg
ccgcgctcctttgttgttccattatgggaaatgccttctaggcgcaaaagactcggggag
atggatagatgggagccagagtcggttgaggtggatatattggaattgacagcaggagct
gataactctggttctttgccgcgaatcgttggacctgctaaggattttgttaggggaagt
atcagtagtcgtccttttcgcccaggtggactggatgatgttgattctttggggaaaatt
cttccagatggttgttacaatggtgaatgggcacaagagcttcttaatgggggcactgga
caagtacttcccccaggctttaaagagggactgaatctaggtcatctcaaggagcattct
tgcacttggaatgttgacaaaaatacaaatggggacaagagcatgccagctgtaaagctg
aatgagctgtcattgcagtttgatgacttattcaagagagcttgggaagaggatgtcttt
gagtacgttggagatggtcatacgcgccagttcgaaactccggtggagtctgttgacgaa
cctagtcaaatagcaaccaagataaaagatccaaccgagataaaagatccacctgagata
aaagactcaactaagataaatgatctaaatgttgctgataatgtgataaagaaaccatcc
tctcttcttgatgaaatcttgtctagtgaatcgaaagaattaaagtcaagattagatgga
gatacaaatatcggtgggcagcaatcaaaagaggcatgggctcttcttgggggaagtgaa
gaaattgtcgaacgatttgaagaacttgttcctgatatggcacttaaatttccatttgaa
ctcgattctttccaaaaggaggccatatattatcttgaaaggggggattctgtttttgtg
gctgcccatacgtcggctggcaagacagttgttgctgaatacgcttttgctctagcatcg
aaacattgcacaagagctgtatacacggctccaattaaaaccattagcaatcagaagtac
agagatttttgtggaaaatttgatgttggtctgcttaccggtgatgttagcttgaggccg
gatgctacttgtctcattatgaccactgagatattgagatccatgctctataggggtgct
gatataatacgcgacatagaatgggttatattcgatgaagtgcattatgttaacgacatt
gaaagaggggtggtttgggaggaagttattatcatgcttccgaggaatatcaatttcgta
ctgctctcagccactgtgcccaacacatttgagtttgccgattggattggtcggacgaag
caaaagcaaattcgtgttactgggaccattaaacgaccagtccctctggagcactgtctt
ttctattctggagagttctataaaatttgtgaaaatgagaagatcatccctcaggggtta
aaagctgccaaagatgtttacaaaaagaaaaattcagccgcaattacaagtggtgcagga
tctgggcctttacctgccaatgaaagggccaggaatcagaaacgtgaaagttcttttaat
gcaaaacaggccaaacattctggatctcagaatttggtgaactctggagctggatggggt
tatcaaaacaatgctagcaacagttgggggttgaggagatcagaagcttccatatggttg
tcacttattaatcagctagccaaaaaattcctcttgcctgtggttatattttgcttttca
aagaaccgatgcgataaatcagcggataacttgactgggacggacctcacgactagctca
gagaaaagtgaaattcggatcttttgtgacaaagcattttcaaggctcaaaggatcagat
agaaatctaccacaggttgtcagagttcaaggccttcttcgaagaggaattggtgtacac
catgctggacttctcccaattgtgaaagaagtagttgaaatgctattctgtcgtggtgtt
atcaaggttttgttttcaacagagacatttgcaatgggagttaacgcccctgcaaggacg
gttgtttttgattctttaaggaaattcgatggcagggaatttcgacagttacttcccgga
gaatatactcagatggctggtcgggctggtaggagaggacttgataaaattggtacagta
gttgtgatgtgtcgtgatgatattcctgaagagaaggatttaaaacatgttttagttggg
agtgcaactaggcttgaatctcagtttcgattgacatatattatgatcttgcatcttcta
cgtgttgaagagttgaaggtggaagacatgcttaaaagaagttttgctgaatttcatact
cagaagaatcttccagagaaacagcaacttctaatgcgaaagcttgctcaacctacaaaa
ataatcgaatgcattaaaggtgaacctgggatagaggattattatgagttgtattcggag
gctgagaggtatggcaatcatatagcggaggcagtcatgcagtcaccagcttctcaacaa
catttaactccgggaagggtggtattggtgaaatcacaattggcccaagatcatttacta
ggtgttgtcatcaaagcaccttcagccaattataaacaatacatagtcttagtgttgacg
cctgaattacctctgggattccaaactccatcaagtagtggagcgaaagaacaagttgat
ttccaaatattagtgccaaaatcaaaacgtggtttgggagacgattattactcttcagca
tcatctcgtaaaggatctggtgtcgtcaatttgaaactacctcaccatggtctcactgct
ggggtgaattatgaggttagaggagttgagaataatgagattttatccatatgcagtcgc
aaaataattatcgaccaagttgggcttctggaagatgtgagtgttggtgcctattctaaa
gcagtacagcagcttttgacattgaaatcagatggaaataaatacccaccagctttagat
ccagtgaaagatctgaaattgaaagaccttgatattgttgaggcttactacaaatggaat
atcctgttgcagaagatggcacaaagtaagtgtcatggttgtgtcaaactggatgaaaac
attaagatggctagagaaatgaagcgacacaaggaggaggtgaatgctcttaagtttcag
atgtcagatgaagctcttcaacagatgcctgattttcagggccggattgatgttttgaag
gaaattggatgcattgacgctgatcttgtagtgcaaattaaaggtcgtgttgcttgtgaa
atgaattctggggaggagttgatatgtacagagttcttgtttgaaaatcaactagatggc
ctggaaccagaagaagctgtggctataatgtcggcttttgtattccagcaaaagaacaca
tccgaacctagtcttactctgaagctctctgaagctaaaaagagattgtatgatatggca
acaagtcttggggagcttcaatcaaaattcaaactacaagtcgatccccaggaatatgcc
cgagagaatctcaagtttggtctagtcgaagttgtctatgagtgggcaaagggaactcca
tttgctgatatctgtgaactcaccgatgttcctgaaggcatgatagttaggactattctt
agattggatgaaacgtgccgtgaattcagaaatgctgcagcaattatgggtaattctgca
cttcacaagaaaatggaaacagcttccaatgcaattaagagggacatcgtctttgctgct
agcttgtacattaccggtttatag
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