Henckelia pumila: 140886585
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Entry
140886585 CDS
T11037
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140886585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140886585
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
140886585
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
Toxin_R_bind_C
OB_RNB
Acid_phosphat_B
Motif
Other DBs
NCBI-GeneID:
140886585
NCBI-ProteinID:
XP_073149345
LinkDB
All DBs
Position
3:complement(180326848..180339676)
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AA seq
935 aa
AA seq
DB search
MLQSKSFVKKTKQGRVVKVVREHYLRDDIYCGAPFCKVCDSSAARLSSSASTILIVDTNV
VLHQIDLLENPAIDDVVILSIVLEEVKNKNLAVYNRLRALCSNSQRRFFVFSNEYHKDTF
VKIETGETPNDRNDRAIRVAAQWYQNHLGNSVRVLLITNDKDNKRKATHDGINAETVESY
VKSLGQPVLLDLIAQPLTEDTAMEDVEDLRPTKRKIIYPEHKPMSEITSGLHCGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDIVVVELLPQDQWHEEKSLAIAND
EEEEEDDVHLAPVSADDAPRVTNISQVSVGDKNATPTRPSGRVVGIIKRNWHSYCGSLDP
MPMPAGDGGVAHALFVSKDRRIPKIRVQTRQLGNLLDKRIIVAVDSWDRLSRYPSGHYIR
TVGEIGDRDTESEVVLIENDVDARPFSYQVLACLPPLPWSVSAEDVGNPIRMDLRDLRVF
SVDPPGCRDIDDALHCTLLPSGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDICSLRADVERLAFSVIWEMTPEAEIISTKFTKAIIKSCAALSYVEAQAR
MDDNRLVDPLTTDLRNMNSLAKIMRRKRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMIEEYMLAANISVAKKILEHFPLNALLRRHPAPTKEMLEPLIRTAAAVGLYLDVS
SSKAMADSLDCAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFAHYGLAAPLYTHF
TSPIRRYADVMVHRLLAASLGIFRLPDVFQDRSWLTGVADNLNYRHRNAQMASRSSVELH
TLIYFRKRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYVIPRGQKGGGEWLIDEQKQQIK
TIRGDVCYGVLQKVMIHMEVVEPQPNRPKLQLSLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaagtcgtttgtgaagaaaacgaagcaaggaagagttgtcaaggtggtg
agagaacactatttgagagatgacatatactgcggtgctccattttgtaaagtttgtgat
agttcggcagcacgcctcagttcgtctgcctcgaccattctcattgttgacactaatgtt
gtcctccatcagattgatttactggaaaatccagctatagatgatgtggtaattctatct
atagtgttggaggaggtgaagaacaagaatttggcagtatataatagacttagagcgctt
tgcagcaactcccagaggagattttttgtcttttccaatgaataccacaaggataccttt
gtaaaaatcgaaaccggtgaaactccaaatgacaggaatgacagagctatcagggtggca
gcccaatggtatcagaatcatcttggtaattcggtgcgtgtcttacttattacaaatgat
aaagataacaagaggaaggccacacatgatggaattaatgccgaaacagttgagtcatat
gtcaaatcgcttggtcagccagtattgctcgacctgattgctcaacctctaactgaggat
actgcaatggaggatgtagaagatctgaggcctactaagagaaagataatctatcccgag
cataaaccaatgtctgaaattacttctggattgcattgtggcatttatcaccaagggaaa
ctacgggtgaatcgttacaatccttttgaagcctatgttgggagtgaaagtattggtgat
gaaattatcatctatggacgaacaaacatgaatagggcttttgatggtgatatagtggtt
gtggaacttttgcctcaagatcaatggcacgaagagaaatctcttgcaatagctaatgat
gaggaagaggaggaagacgatgttcatttagcaccagttagtgctgatgatgctcctcga
gttacaaatatatcacaagtttcggttggggacaagaatgctacaccaactcgtccatcc
gggcgtgttgttggtattatcaaacggaactggcactcgtattgtggatccttagacccc
atgccaatgccagcaggtgatggcggtgttgcccatgctctatttgtttccaaagatcgg
agaattcctaagatacgtgtacaaacgcgacaacttgggaatctattagacaaaagaatt
attgttgctgttgattcatgggatcgcttatcacgatacccctccgggcattacataaga
acagttggggaaattggtgatagagatactgaaagcgaggtggtgctcattgagaatgat
gttgatgctaggccattctcatatcaagttttagcatgcttgccacccttaccttggtct
gtgtctgcagaagatgtaggaaatccaatcaggatggatttgcgcgatctacgcgtattt
agcgtggatcccccaggatgcagggacattgatgatgcattacattgcacacttctacca
agtggaaattttgaagtgggagttcatattgctgatgtaacaaattttgttcaccctgga
actcccttggatgacgaggcttcacaaaggggtacctcggtctaccttgttgagaggcgt
attgatatgcttccaaaacctctgacggaagatatttgttcactccgcgcagatgtagag
agactagccttttctgttatttgggaaatgactcctgaagcagagataatttctacgaaa
tttaccaaggcgattatcaaatcatgtgcagcattatcttatgttgaggctcaggcaagg
atggatgacaatcgcttggtggatccattaaccacagatttacggaatatgaattccctg
gcaaagataatgagacgaaagcgcattgaaagaggggccttaacgcttgcttctgctgaa
gtaaagtttcaaattgacaccgaaacccatgatcctcttgatatcggtatgtatcaaatt
cgagaagcaaatcagatgatcgaagaatatatgcttgctgctaacatatcagtggctaaa
aaaattttggaacattttcctctcaatgctctgttgaggcggcatcctgcaccaaccaaa
gagatgcttgaacctttgattcgaacagccgctgctgttggtctctacttggatgtgtca
tcttcaaaagcaatggctgattcacttgattgtgctgtgggtgatgatccatactttaat
aagctgattcgcattctggcaacaaggtgcatgacacaggcagtatacttttgcagtgga
gatctcagccctccagagtttgctcattatggtctggctgctcctctgtacacacatttc
acttctcccataagacgatacgcagatgtcatggtacaccggttgcttgctgcatccttg
gggatattcaggcttccggacgtattccaagacagatcttggcttactggtgttgctgat
aatttgaattatcggcatagaaatgcccagatggctagccggtcctcagtcgagctccat
accctcatttatttcaggaaaaggcccactgatactgaggccagaatagtgaaaataaga
tcgaatggcttcatagtgttcgtgccaaaatatggaatagaaggacctgtatacgtaatc
ccaagaggacaaaaaggaggaggagaatggttgatcgacgagcagaagcaacagatcaaa
acgatacgcggtgatgtttgttacggtgtgcttcaaaaggtaatgattcacatggaggtc
gttgagccgcaaccgaacaggccgaagctccaactttctcttatatag
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