Henckelia pumila: 140887233
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Entry
140887233 CDS
T11037
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140887233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140887233
03012 Translation factors [BR:
hpum03012
]
140887233
Enzymes [BR:
hpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140887233
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140887233
Translation factors [BR:
hpum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140887233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
T2SSE
SAM_3
nSTAND3
Rad17
AAA_19
Motif
Other DBs
NCBI-GeneID:
140887233
NCBI-ProteinID:
XP_073150451
LinkDB
All DBs
Position
3:complement(15662918..15671588)
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AA seq
855 aa
AA seq
DB search
MSMETETRVGNLLNTSKGTTSVGINASTSADTATVLSKTVEIGGQAPMLEIETGLNELNI
QLKQKQEKMRERDIVKAMLAFREKLPAFKMKSEFLKAVAAAQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGGNCCIICTQPRRISAISVAARVSSERGEKLGETVGYQIRLESKRSDET
RLLFCTTGVLLRRLVEDPTLTGITHLLVDEIHERGMNEDFLLIILRDVLPRRSDLRVILM
SATINADLFSGYFGNAPTIHIPGLTFPVTEFYLEDVLEKTCYCIKTELDNFPGNSRRNRE
SQGSKKDPLTELFEDVDIDSNYKGYSTSTRKSLAAWSGSQLDLDLVKATIEHICRNEGDG
AILVFLSGWDEISNLLDKVKTSNFLGDRNKFLLLPLHGSMPTINQREIFDCPPPNVRKII
LSTNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKMIHDAMPQYQLPEMLRTPLQELCLRIKRLQLGAINTFLSKALQPPDALSVE
NAIELLKTIGALNDREELTPLGRHLSTLPLDPNIGKMLLMGSVFQCLNPALTIAAALSDR
NPFVFPINRREEATDAKRSFAGNSCSDHIALLKAFEGWKDAKCNRMEKSFCWDNFLSPIT
MQMMEDMSYQFLDLLSDIGFVDKSRGAKAYNQYGDDMEMVCAVLCAGLYPNVVQCKRRGK
RTALYTKEVGKVDIHPGSVNAGVHLFPLPYMVYSEKVKTSSIYIRDSTNISDYALLMFGG
NLNASNSGDGIEMLGGYLHFSASETVLDLIRKLRGELDKLLRRKIDEPGFDIVVEGKGVV
AAVVELLHSQNVRYR
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggagactgagacaagagttggaaatttattgaatacttctaaagggactaca
tctgtgggaattaatgcttctacgtctgctgatactgccactgtactatccaaaacagtt
gaaattgggggacaagcacccatgttggagattgagactggcttgaatgaacttaatata
caactaaaacagaaacaggaaaagatgagggaacgtgatattgtgaaggcaatgttagcc
tttagagaaaagctaccagcattcaaaatgaaatcagaattcttgaaagctgttgcggca
gcacaggtgctggtagtttcaggagagactggatgtgggaaaaccacccagcttcctcag
tttatcctggaagaggaaatatcatctctacgcggtggtaattgttgcataatatgcact
caacctcgtagaatatctgcaatatcagttgcagcacgagtatcatcggaaaggggagaa
aagcttggtgaaactgtaggttatcaaattcgtcttgaatcaaagcgttctgatgaaaca
agattgctattttgcaccactggagtattacttcggcggctggtcgaggaccctacttta
acaggaattactcatttgctggtggacgaaattcatgaaagaggcatgaatgaggacttc
ttgttaataatattgcgtgatgttcttcctcgtcgttctgacctccgtgttatcttgatg
agtgccaccatcaatgccgacttattttccggatactttggaaatgcacccacaattcat
atccctgggttgacctttcctgtgacagagttttatttagaagatgtgttggagaaaaca
tgctactgtatcaaaacagagctcgacaattttccaggaaattcaagaagaaatcgggag
tcacaaggctctaaaaaggatcctttgacagaattatttgaggacgtggacatcgattcc
aactacaaaggatacagcacaagcaccaggaaatctcttgcagcgtggtctggttctcag
ctggatttagatctcgtgaaagcaactattgaacacatttgtcgcaatgaaggtgacgga
gccattcttgttttccttagtggttgggacgaaatttcaaatctccttgataaagtcaaa
acaagcaattttcttggagatcgaaataagtttttgctacttcctcttcatggttcaatg
cctactatcaatcagcgggaaattttcgattgccccccgcctaatgttagaaagataatt
ttatctaccaacattgctgagagtagtataaccatagatgatgttgtgtatgttgttgac
tgtggaaaggcaaaagagactagctacgatgctctaaataagttggcttgtcttttgcct
tcatggatatctaaggcatcagcgcaccagagacgtggccgtgcgggtcgtgtacaacct
ggagtttgctataggttatatcctaaaatgatccacgatgctatgccccagtatcaactg
cctgaaatgcttcgaacacctctgcaagagttatgcctacgtatcaagagattgcagctt
ggagcaatcaatacttttttgtccaaggcacttcagccacctgatgctctctccgtggaa
aatgccattgaacttctcaaaactattggcgccctaaatgatagagaagagcttacaccg
ctcggacggcatctcagcactttgcctctagacccaaatatcggaaaaatgcttcttatg
ggatccgtctttcagtgcctcaatcctgcattaacaatagctgctgctctttcggatcgc
aacccatttgtctttccaataaataggagagaggaagctactgatgctaagagatccttt
gctggcaattcttgtagtgatcacattgcacttcttaaggcatttgaaggatggaaagat
gctaaatgcaacaggatggaaaaatcattttgttgggataattttttatcaccaataact
atgcaaatgatggaggatatgagttatcagtttctggatttactctctgacattggtttt
gtagataaatcccgtggtgccaaagcatataaccaatacggtgatgacatggagatggta
tgcgcggtgctctgtgctggactctacccaaatgtggtgcagtgcaaaagaagaggaaag
cgaacagcgttgtacacaaaagaagttgggaaagtggacatccatccaggttcggtcaac
gctggcgttcaccttttccctcttccgtacatggtttacagcgaaaaggttaaaaccagc
agtatatacattcgagactctactaacatatctgattatgctctactgatgttcggtggg
aacctcaatgcgagcaatagtggagatggcattgaaatgcttggcggatatcttcacttt
tctgcatcggagactgtgttagacttgatacggaaactgcgtggtgagcttgacaaactt
ctaagaaggaagatcgatgagcctggttttgacattgtagtcgagggaaagggcgtagtt
gcggctgtagtcgagttattacatagtcaaaatgtgcggtacagatga
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