Henckelia pumila: 140887305
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Entry
140887305 CDS
T11037
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
hpum Henckelia pumila
Pathway
hpum03030
DNA replication
hpum03420
Nucleotide excision repair
hpum03430
Mismatch repair
hpum03440
Homologous recombination
hpum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140887305
03420 Nucleotide excision repair
140887305
03430 Mismatch repair
140887305
03440 Homologous recombination
140887305
03460 Fanconi anemia pathway
140887305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hpum03000
]
140887305
03032 DNA replication proteins [BR:
hpum03032
]
140887305
03400 DNA repair and recombination proteins [BR:
hpum03400
]
140887305
Transcription factors [BR:
hpum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140887305
DNA replication proteins [BR:
hpum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140887305
DNA repair and recombination proteins [BR:
hpum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140887305
MMR (mismatch excision repair)
140887305
DSBR (double strand breaks repair)
HR (homologous recombination)
140887305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
TMEM219
Motif
Other DBs
NCBI-GeneID:
140887305
NCBI-ProteinID:
XP_073150571
LinkDB
All DBs
Position
3:24958501..24961422
Genome browser
AA seq
651 aa
AA seq
DB search
MPVNLTANAISAINAGDVNSKPLVQVLDIKLIGSTQERYRLLLSDSVATQNAMLATQLND
RVKSAGVRSGSVVQLIDYICSTVQNRKIIVILNMETIITDCEIIGNPKMVSESDSAPQIS
APGGAHGYPPAGKNNNIGVQNSVRTNFSNGKTASFQNSGSSIQSYPPTIQPPYQPSPNYK
NQGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSD
GGEIRVTCFNAVVDRFYDAIEVGKVYVISKGSLKPAQKNFNHLKNEWEIFLEATSSVDLC
TDEDASIPKQQFSFRPIGELENAENNSILDVIGVVVTVNPSVPILRKNGMETQRRILNLK
DQSGRSVELTLWGDFCNREGQQLQEMVETGLSPVLAVKAGKVSDFSGKSIGTISATQLFV
NPDFPEARHLRDWFDHGGKDTASHSISREIMAGGSKNEIRKAITQIKDEGLGRSDKPDWI
TVKATISFIKTDTFCYTACPIMIGDRQCNKKVTKSGNSRWLCDRCNQEFEECDYRYLLQV
QVQDHTGLTWVTAFQEAGEEILGCSAKELYMLKYETEDEMKFLEIIRNCLFTEFLLKLKI
KEEIYGDEQKVKITVVKAEKLNYSEESRFLFDVISKFHRTERYNEISYRRY
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctgacggcgaatgccatatcggcgatcaacgccggggacgtgaactcg
aagccgctggtgcaggtgttggatatcaagctaatcggttctactcaggagcgctaccgc
ctcctcctctctgattcagtcgcaactcagaacgcgatgctcgctactcagctcaacgac
cgtgtcaagtccgccggagtgcgcagtggatccgtagtccagctcatcgattatatctgc
agcaccgtgcaaaatcgcaagattattgtgattctaaacatggaaactatcataactgac
tgcgagataatcggtaacccaaaaatggtttctgaatccgattcagcacctcaaatttcg
gcacctggtggggctcatggatatccaccagcgggaaaaaataataatattggtgttcaa
aattcagtgcgtactaacttcagtaatggcaaaactgctagcttccaaaattcaggcagc
agtatccagagttatcctcccactattcaacccccttatcagccatctccaaattataaa
aatcagggggctatcatgaaaaatgaggccccagcacgcatcatccctattgctgctttg
aatccttatcaaggccgatgggctatcaaagctcgggtgacagcaaaaggagatctacga
cgttacaacaatgcaaaaggagatggaaaggtgttctcatttgatcttcttgattctgat
ggtggggaaattcgagtgacatgcttcaatgctgtagtcgatcgtttctatgacgctatt
gaagttggaaaagtatatgtgatatcaaaaggtagcttgaaacctgcccagaagaacttc
aaccatctgaagaatgagtgggaaatattcttggaagcaacatcatcagtggatctttgt
acagatgaagatgcttccataccaaagcaacaattctcttttaggccaattggtgaactt
gaaaatgcagaaaataactctatattagatgtcattggtgttgttgtaactgtcaacccg
tctgtccccatcttgagaaagaatggaatggaaactcaaagaagaattctgaacttgaag
gaccaatctgggagaagtgttgagttgacattatggggagatttctgcaacagggaagga
caacaattgcaagaaatggttgaaactggattatcccccgttttggctgtcaaagctgga
aaagttagtgactttagtgggaagtccattggcaccatatctgctacacagctatttgtg
aatcctgattttccggaagctcgtcacttaagagattggtttgatcatggaggtaaagat
acagcttctcattctatatctagggaaattatggctggaggatcgaaaaatgagatacgc
aaggccattacacagataaaggatgaagggctcggaaggtcagacaagcctgactggatc
actgttaaggcaaccatatctttcatcaaaactgatactttctgttatacggcctgccca
ataatgattggggatagacagtgtaacaagaaagtgactaaatcagggaactcacggtgg
ctgtgtgataggtgtaaccaagagtttgaagagtgtgattacagataccttcttcaagtt
caagttcaggatcatactggcttgacatgggtgacggcttttcaagaagctggtgaagag
attttgggttgctcagcgaaggaattgtacatgctgaaatatgaaaccgaagatgaaatg
aaatttcttgaaattattcgaaactgcctatttacagagtttcttcttaagctaaaaatt
aaagaggagatatatggtgatgagcagaaggtgaagatcacagttgtcaaggcagagaag
ttgaactattcagaagagagtagattcttgttcgatgtgatttcaaaatttcatcgcacc
gaaagatacaacgaaataagctatcggagatattag
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