Henckelia pumila: 140887521
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Entry
140887521 CDS
T11037
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
hpum Henckelia pumila
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hpum03041
]
140887521
Spliceosome [BR:
hpum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
140887521
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
UTP6_C
TPR_16
DUF7885
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
140887521
NCBI-ProteinID:
XP_073150894
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Position
3:complement(57856900..57865764)
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AA seq
784 aa
AA seq
DB search
MGDGEFVVAQTSAVAGYSSIDSHDLSETSSAPDAGASTVQTTESMNVPGNLPYTEGILDS
SIPPDEANLVAHGSNLHVAAGYGSSINGVNGAEDAAKVNVMENGITSNAGSGSSLLHQPL
GLSEEEERLWSIVTANSLDFNAWTSLIEETERLSEGEILKIQKVYDAFLAEFPLCYGYWK
KYADHEARLSSMDKVAEVYERAVQSVTYSVDMWLHYCVFTIGTYGDPDAIRRLFERALEY
VGSDYLCFPLWDKFIEYEISQQDWPRVATLYTRVLEIPNQQLDRYFEGFKELVANRPLSE
LRTAEEAADFTNSETGGEENEGEIPTGALEQSFKPLNASLKDAEELEKYISIREEIYKRA
KEFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFVEGGDEFNKIVKLYERCLIACA
NYAEYWIRYVLCMEARGSMELADNALARATQIFVKRQPEIHLFAARFREKHDDISGARAA
YQLVHTGVSPGLLEAIIKHANMEHRLGNLEESCSLYEQAVAIEKGKEHSQTLPLLFAQYS
RFMFLVCGKVDKAREILDQGLEIVQLSKPLLEAMIHLESIQTLPKRIDYLDSLVDKFIVH
NPTNASVASLGEREELSSIFLEFLDLFGDAQSIKKADDRHAKLFLPHKSVAESKKRYADD
YLFSDKAKLSKSLVSPSAPSVVGAYNTSAPNQWAAGYGLQPQAWPQASQAQAQQWTPGYP
QQGAYGAYGTSYTHPQIPTSQSAAYGTYPPTYPTQAYAQPATNATLTGTQQPAAAPNTYY
GTYY
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggagacggcgagtttgtggtggcacagacatctgctgttgctggttattcttctata
gatagccatgatctgagtgaaacctcttctgcacctgatgctggtgcttccactgttcaa
actaccgaaagcatgaatgttccaggcaatctgccatatactgaaggcatacttgattcg
tccatccctccagatgaagctaatttagtggctcatggttccaatttgcatgttgctgct
ggctatggttcttctattaatggtgttaatggagcagaggatgcggcaaaagttaatgtc
atggaaaacgggattacctcaaatgctggtagtggatcttctttgttgcatcaacctcta
ggtctaagtgaagaagaagaaagactgtggagcattgtgacggctaattccttggacttt
aatgcttggacttccctgatagaagagacagagagactatcagagggtgagattttgaag
attcaaaaagtttatgatgcctttttagcggaatttcctctctgctatggttactggaag
aagtatgctgatcacgaggcacgcctaagctcaatggacaaagttgcggaggtttatgaa
cgagctgttcaaagcgtaacctactctgttgacatgtggttgcactattgtgtatttaca
attggcacgtatggagatcctgatgctatcagaaggttatttgaaagagctttagaatat
gttggaagcgattatttatgctttcctctttgggacaaattcattgagtatgaaatttca
caacaagattggcctagagttgcgacattatacacaagggtgttggaaattccaaatcag
cagctggatcgctattttgaaggttttaaagagttggttgctaataggcctctatcagaa
ttgagaacagctgaggaagctgctgattttacaaattcagaaactggtggtgaggaaaac
gagggagagatccccactggtgctttggaacagtcttttaagcctcttaacgcaagctta
aaggatgccgaggagttggagaagtacatatccattagggaagagatatataagagagct
aaagagtttgattctaagatcattggttttgaaacagctattaggaggccctactttcat
gtacgacccctcaatgttgcagagcttgaaaactggcataactatcttgattttgttgaa
ggcggagatgaattcaataagattgtcaagctatatgaaagatgtcttatagcatgtgcc
aattatgctgaatactggatacgctatgttttgtgcatggaagctagaggcagtatggag
cttgctgataatgcccttgctcgtgctactcagatcttcgtgaagaggcaaccggagatc
catctttttgctgcgcgatttagagaaaagcatgatgacatatctggagctcgagctgcg
tatcaacttgtgcacactggggtttcacctgggcttctagaagcaataattaagcatgca
aacatggagcaccgccttggaaacctagaagaatcttgttctttatatgagcaggcagtt
gcaatcgagaaaggaaaggaacactcacagactttgcctttgttatttgctcagtactca
cggtttatgttcctggtttgtggcaaagtggataaggcgagggaaattcttgatcaaggg
ttggagattgtgcaattatcaaagccccttttggaggcaatgatccacttagaatcaatt
cagacacttccgaagcgaattgattacttggattcgttggttgataaattcatagtgcat
aatcccaccaacgccagtgttgctagtcttggggaaagagaggaactgtcgagcattttc
ttggagttcttggatctttttggagatgcacaatccataaagaaggctgatgatcgacat
gcaaaactgtttttgccccacaagagcgtagctgagtcgaagaagcgctatgcggatgat
tatttgttctcagacaaagctaaactctcaaaatcacttgtttcaccatctgccccttca
gtggtgggcgcatataataccagtgcaccgaatcagtgggcagcaggttatggtttgcag
cctcaggcttggcctcaagcctcacaagctcaggcacaacagtggactcctggctatcca
caacagggtgcttatggtgcttacggaacgagttacacacacccacaaatacctacatcc
caaagtgctgcatatggaacatatcctcctacttatccaacacaggcttatgcgcagccg
gcaacaaatgcaacattgactggaacccaacaaccggctgcggctcctaacacatattac
ggcacgtattattga
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