KEGG   Henckelia pumila: 140891716
Entry
140891716         CDS       T11037                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
hpum  Henckelia pumila
Pathway
hpum03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hpum00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140891716
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpum03019]
    140891716
   03036 Chromosome and associated proteins [BR:hpum03036]
    140891716
Messenger RNA biogenesis [BR:hpum03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     140891716
Chromosome and associated proteins [BR:hpum03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     140891716
    COMPASS/SET1 complex (yeast)
     140891716
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WD40_Gbeta EIF3I Beta-prop_WDR3_2nd WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_NOL10_N CFAP251_N Beta-prop_VPS8 Beta-prop_SPT8 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_NWD2_C WD_LRWD1 Beta-prop_NUP159_NUP214 RMC1_N Tricorn_2nd
Other DBs
NCBI-GeneID: 140891716
NCBI-ProteinID: XP_073156429
LinkDB
Position
3:complement(172473230..172476454)
AA seq 331 aa
MTPLSHLSDHLVADMSISALFNDFGGKINCLDFHRTADLLVTSCEDDSVRFYDITSAKLL
KTTYHKKHGADRICFTHHPSAVICSSKYSLDSDEAPESLRYLSMYDNRCLRYFKGHKGRV
VSLCMSPVNDGFMSGSLDHSVRMWDLRVNVCQGMLHLRGRPTVAYDQQGLVFAVAMEGGA
IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNHVYLLDAYHGEKKCG
FSMDSSANVTIEATFTPDGQYVLSGSGDGKIHAWNISDEPNKVGCWDSYIGVPTCLRWAP
RRAMFAAATSVLSFWIPSEEGKPPVEPLSET
NT seq 996 nt   +upstreamnt  +downstreamnt
atgacgcctctctcccatctcagcgatcaccttgttgccgacatgtccatctcagctctt
ttcaatgatttcggtggaaaaattaattgcctcgatttccatcggaccgctgatttgctg
gtcacttcttgcgaagatgattctgtgcgattctatgatattacaagcgccaaattgctg
aagacaacatatcataagaaacatggggctgatagaatttgcttcactcaccacccaagt
gctgtaatatgctcttcaaaatacagtttggattctgatgaagctccagaatcgttgagg
tatctgtctatgtatgacaatcggtgccttcgctactttaagggacacaaaggaagggta
gtgtccttgtgcatgtccccagtcaatgatggttttatgtctggttctctggatcacagt
gtacgaatgtgggatcttcgtgtgaacgtctgccagggaatgttacatctacggggtagg
cctactgttgcttatgatcaacaagggttggtctttgcagtggctatggaaggaggagca
attaaattatttgattctagatcatatgacaagggtccgtttgatacattcctagtgggg
ggtgatacagctgaggtttgtgatattaagttcagcaatgatggtaaatcaatgcttttg
acaacaactaacaaccatgtgtatctcctcgatgcttatcatggggaaaagaaatgtgga
tttagtatggactcatctgcaaatgtgacgatagaggcaactttcactcctgacggccaa
tatgtgctttctggctcaggtgatggaaagatacatgcatggaacatcagtgatgagcct
aataaggtagggtgctgggatagctacataggagtcccaacatgcctgagatgggctccc
cgtagagcaatgtttgctgctgcaacttcggtactcagcttttggattccaagtgaagaa
ggcaaaccacccgtggaaccactatctgaaacttga

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