Henckelia pumila: 140892212
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Entry
140892212 CDS
T11037
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hpum Henckelia pumila
Pathway
hpum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140892212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140892212
Enzymes [BR:
hpum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140892212
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
140892212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
140892212
NCBI-ProteinID:
XP_073157128
LinkDB
All DBs
Position
3:38885665..38900211
Genome browser
AA seq
1723 aa
AA seq
DB search
MAQTYEGTTEAVEAVRFGFMTDEELKKHSVVKITNPELLNTLEKPIPGGLYDYALGPLDE
NSRCKTCGQRQYNCPGHCGHIDLVLPAYNPLMFKFLEDILNKTCFYCFHFRSTREEVENC
IFQLKQIAKGDIIGAKKFRLTRKLGNKAKYEWVLSMGIDEAEDSQGSCASHLSEHSSSQN
NHDRHKKPYWDSSLLAEATSVLDEFLKKKIKKCKNCECKNPKISRPTFGWLHLGGLSDEQ
IRANHISRLKMPSNGGEDDKHSSEVVNASECSDLDDSETIEANSSIALSDDGEKLNTSHM
NHKRRKNMGSEEVLINNLKGPLLPSEVRDIVRRLWDNEAPLCSLICNIQQQCEQSEKIQG
HYMFFLETILVPPIKFRPPAKGGDSIMEHPHTLLLGKVLQSNIALGNAHVNNAEHSKIIN
RWMNLQQSINVLFDSKTASSQGQKDATSGICQLLEKKEGIFRQKMMGKRVNFSCRSVISP
DPYLAINEIGIPPYFALRLTYPERVTPWNAAKLRGSVINGPEIHPGATVYVDSVATARLP
PGNEKARVAISRKLPSSRGAVTQSGKSKDLEFEGKIVYRHLQDGDIVLVNRQPTLHKPSI
MAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVP
TRGDTVRGLIQDHIVGAVLLTMKDTFITRSEFSQLLYGSGVFSGGPGILPGKHALKISLV
ASEGLVDSVLPTVWKPEPLWTGKQVISALLNHVTRGCAPCTVKNQGKIPKNYFTENNCGK
EEEDEDQNAEHKLLIWKNELVHGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT
VFLQIHGFTCGLDDLIILPHFDVQRKEKLEGDDVGEEVHCDFVKFKPGQIGAEELQLEIE
KAICADRESATASLDVKMKNKLTNKLTSEGSQILKHLLTTGLLKPFPRNCISVMTTTGAK
GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGFITDRFLTGLRPQE
YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG
VDVHQTSFLRNFDALEDNQGPIFQKFQIEREFNAYIEKLPEGLEEEANRYIEVAKKKSEI
GKVNVTNKLHKRRKATSNKHLSDKLMTTITKPDKFIDLVKQKYLSSLAQAGEPVGVIAAQ
SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASENIKTPILTCPFLQWRFKRDV
VSLVSNVKKVTIADLLESMEVQLSVDHRKQARIYKLIIKLKDSEFVSLEDTHQTLNSVFI
KKLDDEIENHVGFLSRVLGIKNFKSSSRADELNDIDGDSGAGAQEKDDDDDDDDDGELDA
GDDLGSDLLKRKQQATDEVDYKDESDAEPGEHELLAEQEKGITDDDHLEDEDTRKDEETE
DSATDDEATDHEASNELNEDVVSVAKSNSKRSEAKRVKKSTGKLSDKKLRRVTYAAAEGL
SFEVHFNFTLEPHLILSQLAQKTAKEVYIKRAGDISRCKMVQYDADEKTVIWDDKKKQKK
GEFESPQTDGEDAAAYWAVKAFGVDFKSFWKMQEDLDTSRVYSNNIHAMLQTYGVEAARA
TIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMSRHGSICHSLSPFLKMSFETAS
KFIVEAASHGLTDDLETPSSRVCLGLPVKMGTGCFDLMQKLEA
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacatatgaggggacgacggaggctgtcgaggcagtgagatttggtttcatg
acagatgaagaattgaagaagcatagtgttgttaagattactaatcccgaattactcaac
actctcgagaagccaatccccggtggactgtacgattatgccttgggccctcttgatgaa
aactctcggtgtaaaacatgtggtcaaaggcaatataactgccctggtcattgtggtcac
atcgatcttgttctgcccgcatataatcctctgatgtttaagtttctggaagatatcctt
aataaaacctgtttttactgctttcattttcgatcaactagagaagaggtggagaattgc
atttttcaattgaaacagattgcaaagggcgatatcatcggggcaaaaaagtttaggttg
acacgaaagttaggaaacaaagcgaagtatgagtgggtcttatcaatgggtatagacgaa
gcagaagatagtcaagggagttgtgcatcacacttatcagaacactccagtagtcaaaat
aaccatgaccgtcataagaagccttactgggattcttctctgctcgctgaagccacttct
gttctggatgagtttttaaagaaaaagattaagaagtgcaagaattgtgaatgcaagaat
ccaaagattagcagaccaacttttggatggttgcatctgggtggactctctgacgagcaa
attcgggcgaatcacattagcaggttgaagatgccttccaatgggggagaagacgataag
cattcatctgaggtggttaatgctagtgaatgctcagacttggatgattctgagaccatt
gaggcaaattcgtctatagctttgtctgatgatggtgaaaagctcaatacaagtcacatg
aaccataaaagaaggaagaatatgggttctgaagaagtgctaattaacaatttaaaaggg
cctctgttgccatcagaggttagagacattgtgcgccgtttgtgggataatgaagctcct
ctttgctcattaatatgtaatattcagcagcaatgtgaacaatctgaaaaaatacaaggt
cactatatgtttttcctggagactattctcgtacccccaataaaattccgccctccggcc
aaaggtggtgattccataatggagcaccctcacactcttctgttgggtaaggtactgcag
tcaaatattgctttaggaaatgcgcatgtgaataatgctgagcattcgaagatcattaat
cgctggatgaatcttcagcaatctattaatgtgttatttgatagcaaaactgcaagtagt
caaggtcaaaaagatgccacttctggaatttgtcagctgctggagaagaaagaaggtatt
ttccgtcagaagatgatgggcaaaagagtcaatttttcttgccggtctgttatatctcca
gatccttatttggcaattaatgaaattggaattcctccatattttgcattgagattaacc
tatcctgagagggttactccttggaatgctgctaaattgaggggttccgtcattaatggg
cctgaaattcatcctggagctacagtatacgttgatagtgtagccaccgcaaggctgccc
cctggcaatgagaaagctcgagtggcaatatctagaaaattaccttcttcaagaggggca
gttacacaatcagggaagagcaaggatcttgaatttgaaggcaagatcgtttatcgccac
ttgcaggatggggatatcgtgcttgtgaatcgccagcctacactccacaagccaagcatt
atggctcatgtcgtccgtgtattaaaaggagagaaaacactgcgcatgcattatgcaaat
tgcagctcctacaatgctgattttgatggggatgagattaacgttcattttcctcaggat
gaaatttctcgtgctgaagcttataacattgtaaatgctaatgagcagtacattgttcca
acaaggggtgatactgtgaggggattgattcaggatcatattgttggtgctgttcttctg
acaatgaaggatacatttattacacgtagtgaattcagtcagctgctctacggatccggg
gtgttttcaggtgggcctggtatacttccaggcaagcatgccttgaaaatttcgttagta
gcttccgagggtctggtggactctgttttgcctacagtatggaaaccagagcctctctgg
acgggaaagcaggtcatttcagcgttgttgaatcatgtaactagaggctgtgcgccttgt
actgtaaaaaatcaggggaaaataccaaagaattatttcactgagaataattgcggaaaa
gaagaggaagacgaagatcagaatgctgaacacaagttgctgatttggaaaaatgagctt
gtgcacggtgtgattgacaaggctcaatttggaaagtttggtctggttcacacagtgcaa
gagctttatggatctaacagtgctggcattttgctatctgcattgagtcgcttattcaca
gtctttttgcagattcatggattcacatgtgggctagatgatcttatcatattgcctcac
tttgatgtccaacggaaggagaaacttgaaggagatgatgttggtgaagaggttcactgt
gattttgtgaagttcaaacctggacaaataggcgccgaagaactgcagttggaaattgag
aaagccatatgcgctgacagagaatctgccacagcatcgttggatgttaaaatgaaaaat
aaattgacaaataagctcactagcgaaggttctcagatactcaaacatttacttacaact
ggattgttaaaacctttcccaaggaactgtatttctgttatgacgacaaccggggcaaaa
ggcagtacggtgaattttcaacaaatatctgcctatctagggcaacaggagttggaaggt
aaaagggttccccgcatggtgtctgggaaaactttgccatcatttccgccctgggacttc
acttctagagcagggggcttcatcactgatcgttttctaactggtcttcggcctcaggaa
tattatttccattgcatggctggtcgtgaagggttagttgatacagcagtaaaaacatct
cgcagtggatatttacagcggtgcctgataaaaaatcttgagagcctgaaagtttgttat
gattatactgtccgtgatgctgatggttccatcattcagttctattatggagaagatgga
gtcgacgtgcaccagacaagctttctaagaaatttcgatgcactagaagataatcaaggg
ccgattttccaaaagtttcaaattgagcgcgagttcaatgcttacattgaaaagttgcct
gagggcctcgaagaagaagccaatcgctatattgaagtggcaaaaaagaaatcagaaata
gggaaggtgaatgtaaccaacaagcttcataaaagacgaaaggcaacaagtaacaagcat
ctatccgataaactaatgacaaccataacaaagccagacaagttcatagatttggtgaag
caaaagtatctgtcaagcctagcacaagcaggagaacctgtcggtgtcattgctgctcag
tctgttggggaaccatcaacccagatgacgctcaacacatttcatctcgctggccgtggt
gaaatgaatgttacgcttggtataccacgtctccaggagattttgatgaccgcatcagaa
aatattaagactcctatcttgacgtgcccgttcttgcaatggagattcaagcgtgatgtc
gtgtctcttgtgtcaaatgtgaagaaggtcactatagcagatttgttggagagtatggaa
gttcaactctcagttgatcatcgtaaacaagctagaatctacaagctgataattaaatta
aaagattctgaattcgtgtctttagaagacacacaccaaactctcaactctgtgttcatt
aagaaattggatgatgaaatagagaatcacgttggttttctatcacgagttttgggaatt
aaaaatttcaagtccagttcgagagcagatgagttgaacgacatcgatggcgattctggt
gctggagcacaagaaaaggatgacgacgacgacgacgacgacgacggagaactggatgcc
ggagatgaccttggttcagatctactaaaaagaaagcaacaagctacggatgaggtggat
tacaaggatgaatctgatgctgaacctggtgaacatgagttactggcggaacaggaaaaa
ggaattactgatgatgaccatctggaggatgaagataccaggaaagatgaagaaactgaa
gactcagcgactgacgatgaagcgactgaccatgaggcgtctaatgagctaaacgaggat
gttgtgtcagtagctaaatcaaatagcaaacggagtgaagcgaaaagagtgaagaagtca
acaggaaaattatccgataagaaattacgtagggtaacatacgccgctgccgaaggcttg
tcttttgaagtgcacttcaacttcaccttggagcctcatttgattctttcccagcttgcc
caaaaaacggccaaggaggtatacatcaagagagctggcgatatcagtcggtgtaaaatg
gtgcaatacgatgcagatgaaaaaacggtcatttgggatgataaaaaaaaacaaaagaag
ggtgagtttgaaagcccacaaactgatggagaggatgcagcggcctattgggcagtaaag
gcattcggagttgatttcaaatctttctggaaaatgcaagaggacttagatacaagccgt
gtatattccaacaatatccatgcaatgttgcagacatatggagtagaagccgccagagcc
accataataagagaggtgaagcaagttttcgatatttatggagtaaagattgattatagg
catttaagcttgatcgcggactacatgacacacgctggtggataccggccaatgagcaga
cacggaagcatttgccattctttgtcgccgtttcttaagatgtcatttgagacagcatct
aaatttattgttgaagcagcatctcacgggctaacagacgacctggagacgccgtcttct
agagtttgtctgggcttgcctgtgaagatggggactggttgttttgacttgatgcaaaag
ttggaagcttga
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integrated database retrieval system
