Henckelia pumila: 140894607
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Entry
140894607 CDS
T11037
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
hpum Henckelia pumila
Pathway
hpum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140894607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpum03021
]
140894607
Transcription machinery [BR:
hpum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
140894607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
WHD_SOWAH
DZR_2
DZR
DUF1258
Motif
Other DBs
NCBI-GeneID:
140894607
NCBI-ProteinID:
XP_073159267
LinkDB
All DBs
Position
4:complement(1934285..1938659)
Genome browser
AA seq
538 aa
AA seq
DB search
MPIDLILKPSCGGCGSTVDLYGSTCKHLTLCLTCGKTMAENRAKCYECGTPITRLIREYN
VRASSSSIKNHFIGRFPTGVPNFKKKTDNKWSLQKEGLQGRQVTDALREKYKNRPWLLED
ETGQFQYHGQLEGSQSATYYLLMLQGKEFLATPAGSWYNFNKVAQYKQLTLEEAEEKMKN
RRKTADGYQRWMMKAANNGPAAFGEVEKFDEQESGAGGGKGRKKAAGDDDEGNVSDRGEE
DEEDEASRKSRLGLNKKSGDDDEEGPRGGDLDFDDDDIEKGDDWEHEEIFTDDDEAVGND
PEEREDLAPEIPAPPEIKQDDEDEDEADEEGEVLSKSGKELKKLLGRANGMNDSETEDDD
DDDEEDDMEDDISPVLAPKKEAPNEKPAEYSTPPKATTSGSGRVTPSSSKSSKSKRKGNG
EDSKTPNGAPLKKVKTEHEVKSVKDETMVATKSTVPPKGASPPAPSKPGSTPPSGPVTED
EIRAVLLQKAPVTTQDLVAKFKSRLKLKEDKDAFAAILRRISKIQKTNGANYVVMRDR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgccgattgatttgatattgaagccgtcatgcggcggttgcggctccacggtggatcta
tatggcagcacttgcaagcatctgacactttgcttgacgtgcggcaaaaccatggctgag
aatcgtgccaagtgctacgagtgcggaacccccatcactcgtttgattagggaatataat
gttcgggcaagttccagtagcatcaaaaatcattttattggtagatttcctaccggtgtg
ccgaattttaagaagaagaccgataataaatggtcattgcagaaagaaggcctgcaggga
cgccaagttactgatgctttgcgggagaagtacaaaaatagaccttggctgctggaggat
gaaactggccagtttcagtaccatggtcaactagagggttcacagtcagctacatattac
ctcttgatgcttcagggaaaggaatttcttgctactcctgctggttcttggtacaacttt
aacaaagtggctcagtataagcaactcactttggaggaggcagaagaaaagatgaaaaat
agaaggaaaactgctgatggctaccagagatggatgatgaaagcagcaaacaatggacct
gccgcctttggtgaagttgaaaagtttgatgaacaggaaagtggagctggtggtgggaag
ggacgcaaaaaagctgctggggatgatgatgaaggcaatgtttcagatagaggagaggaa
gatgaagaagatgaggcatcaagaaaaagtcggctgggacttaataaaaaaagtggggat
gacgacgaggaggggcctaggggaggtgacctggattttgatgacgatgatatcgaaaag
ggtgatgattgggagcatgaagaaatttttacagacgatgatgaagcagttggaaatgat
cctgaggaacgtgaagatttggcccctgaaatacctgctccaccagaaatcaagcaggat
gacgaggatgaggatgaggcggatgaagagggtgaagtgctaagcaaatccgggaaagaa
ctgaagaaactgcttgggcgagctaatgggatgaatgattcagagacagaggacgatgat
gatgatgatgaagaggacgatatggaagatgatatttctcctgtacttgctcccaagaag
gaagctcctaatgaaaagccagctgagtacagcactccaccaaaagcaactacttctgga
tcaggtcgtgtgacaccctcctcatcaaaatcttcaaagagtaaaagaaaaggtaatgga
gaggattcaaaaacacctaacggtgcgcccctgaaaaaagtgaaaacagaacacgaagta
aaatccgtgaaagatgaaactatggtggcgacgaagagcaccgtgcctcctaaaggtgca
tctccaccagcaccatcaaaacctggatcaacaccaccttctggaccagttactgaagat
gaaatcagggctgttctgttgcagaaggctccagtgaccacgcaagatcttgtagccaaa
tttaaatccaggctaaaactgaaagaggataaagatgcatttgctgccatattgagaaga
atatcaaagatacagaagactaatggggccaactatgtcgtgatgagggacagataa
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